Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GKC13_RS00070 Genome accession   NZ_CP046134
Coordinates   14242..15342 (-) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9242..20342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS00055 (GKC13_00055) - 10093..10965 (-) 873 WP_011227628.1 YitT family protein -
  GKC13_RS00060 (GKC13_00060) trpS 11393..12415 (+) 1023 WP_207559863.1 tryptophan--tRNA ligase -
  GKC13_RS00065 (GKC13_00065) guaB 12592..14073 (+) 1482 WP_014608806.1 IMP dehydrogenase -
  GKC13_RS00070 (GKC13_00070) recF 14242..15342 (-) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  GKC13_RS00075 (GKC13_00075) yaaA 15345..15722 (-) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  GKC13_RS00080 (GKC13_00080) - 15800..17050 (+) 1251 Protein_12 pitrilysin family protein -
  GKC13_RS00085 (GKC13_00085) - 17052..18329 (+) 1278 WP_179970794.1 pitrilysin family protein -
  GKC13_RS00090 (GKC13_00090) - 18388..19245 (+) 858 WP_014608803.1 helix-turn-helix domain-containing protein -
  GKC13_RS00095 (GKC13_00095) pgsA 19258..19800 (+) 543 WP_002947777.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=350121 GKC13_RS00070 WP_002947786.1 14242..15342(-) (recF) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=350121 GKC13_RS00070 WP_002947786.1 14242..15342(-) (recF) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432