Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   GJV39_RS03805 Genome accession   NZ_CP046114
Coordinates   755271..757109 (-) Length   612 a.a.
NCBI ID   WP_021109736.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 750271..762109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS03780 (GJV39_03780) - 750725..751564 (-) 840 WP_021109740.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  GJV39_RS03785 (GJV39_03785) ampD 751622..752188 (+) 567 WP_021109739.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GJV39_RS03790 (GJV39_03790) - 752181..753089 (-) 909 WP_021109738.1 lysine exporter LysO family protein -
  GJV39_RS03795 (GJV39_03795) dinB 753233..754303 (+) 1071 WP_021109737.1 DNA polymerase IV -
  GJV39_RS03800 (GJV39_03800) htpX 754409..755260 (+) 852 WP_005714149.1 protease HtpX -
  GJV39_RS03805 (GJV39_03805) uvrC 755271..757109 (-) 1839 WP_021109736.1 excinuclease ABC subunit UvrC Machinery gene
  GJV39_RS03810 (GJV39_03810) pgsA 757142..757690 (-) 549 WP_005714153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GJV39_RS03815 (GJV39_03815) modB 757845..758546 (+) 702 WP_035491186.1 molybdate ABC transporter permease subunit -
  GJV39_RS03820 (GJV39_03820) modC 758546..759607 (+) 1062 WP_005714155.1 molybdenum ABC transporter ATP-binding protein ModC -
  GJV39_RS03825 (GJV39_03825) sodA 759825..760445 (+) 621 WP_005714158.1 superoxide dismutase [Mn] -
  GJV39_RS12140 - 760494..760797 (-) 304 Protein_732 hypothetical protein -
  GJV39_RS03830 (GJV39_03830) - 760828..761448 (+) 621 WP_021109733.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69499.61 Da        Isoelectric Point: 8.7716

>NTDB_id=350080 GJV39_RS03805 WP_021109736.1 755271..757109(-) (uvrC) [Glaesserella parasuis strain SCW0912]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTQHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDSYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQMRVVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKMLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HSVSEVDALEKVLSEQAGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKRYDKPLPPEKIPDIIFIDGGKGQLNRALDTFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=350080 GJV39_RS03805 WP_021109736.1 755271..757109(-) (uvrC) [Glaesserella parasuis strain SCW0912]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCAATCTTGCCAGCCGAA
AAACCGAAGCCTTGGTCTCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTCCGTGACGATAAATCTTACCCTTATATTTTGCTCAC
CCAACACCAACACCCACGTTTAGCCAGTTTTCGGGGGAGCAAAAAAATTGCTGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGAGAAACCTTAAATCTGCTCCAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAGCTACTACAAAAAC
CGTTCTCGTCCTTGTTTGCAGTATCAAATCGGGCGTTGCCTTGCCCCTTGCGTTGAAGGGGTTTATTCCCAGAGAGAATA
CGATCAACAGGTGGAATATGTCCGCTTATTCTTACAAGGCAAAGATCAGCAAGTGATCGAACATTTGATCGGTAAAATGG
AAAAAGCTGCGGAAGATCTGGATTTTGAAGCTGCTGCCCGTTTTCGAGATCAAATTCAGCAGATGCGAGTGGTCACTGAA
AAGCAATTTGTATCGAATGAACGTCTAGACGATCTCGATATTATTTCGATTGCCTACCAACACGGTATCGCTTGCGTACA
TATTCTGTTTGTACGACAAGGGAAAATGTTGGGTAGCCGAAGTTATTTCCCAAAAGTGCCGAACCATACCGAACTTGCCG
AATTGAGTGACACTTTTATCGGGCAATTCTATTTGCAGATGAACCAACATCGCACCATTCCGCATCAAATTATTATCGAT
CACTCCGTGAGCGAAGTGGACGCCTTAGAAAAGGTATTATCGGAACAAGCAGGGCATAAAGTGAGCATTACCGATAAAGT
GCGTGGTGAAAAAAGCCGTTATCTTGCGCTTGCCAAAACGAACGCAATGGCAGCATTGACCTTACAGCTCAAGCAAGATG
CTCGAATCCAAACCCGTTATGAAGCTTTACAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACGGTCGCTTCTTGTGTGGTGTTTGATGAAAATGGACCGTTAAAATCCGACTATCGCCG
TTTCAACATTGAAGGTATTACAGGGGGCGATGATTATGCCGCAATGGAACAAGCCCTGCTCAAACGTTATGATAAACCGC
TACCGCCTGAAAAAATCCCTGATATTATTTTTATTGACGGCGGAAAAGGGCAGTTAAATCGAGCCTTAGACACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTCATCGGCGTGGCAAAAGGCGTAGAACGAAAAGCTGGGCTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACCTACCACCCGACAGCCCTGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGTGGTTTAGAGGCA
ATCGCTGGCGTTGGGGCTAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrB/uvrC motif (UVR)

(204-235)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.869

99.673

0.377
  uvrC Streptococcus pneumoniae R6

37.541

99.673

0.374
  uvrC Streptococcus pneumoniae D39

37.541

99.673

0.374