Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMO_RS14340 Genome accession   NC_013016
Coordinates   2096760..2097224 (-) Length   154 a.a.
NCBI ID   WP_162051247.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2095534..2096499 2096760..2097224 flank 261


Gene organization within MGE regions


Location: 2095534..2097224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS10790 (NMO_1951) - 2095534..2096499 (+) 966 WP_002221026.1 IS30-like element IS1655 family transposase -
  NMO_RS14340 (NMO_1952) comE 2096760..2097224 (-) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16516.81 Da        Isoelectric Point: 10.8645

>NTDB_id=34996 NMO_RS14340 WP_162051247.1 2096760..2097224(-) (comE) [Neisseria meningitidis alpha14]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=34996 NMO_RS14340 WP_162051247.1 2096760..2097224(-) (comE) [Neisseria meningitidis alpha14]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGTCCGGCGAAGGCGAAGGCCATTGCGGAATACCGCGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGCATCGGCCCTGCGGTATTGGCGAAGCTGAAGGACCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment