Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMO_RS14335 Genome accession   NC_013016
Coordinates   1871075..1871539 (-) Length   154 a.a.
NCBI ID   WP_162051247.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866075..1876539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS09565 (NMO_1729) - 1866113..1866358 (-) 246 WP_015815894.1 hypothetical protein -
  NMO_RS09575 (NMO_1730) - 1866470..1866898 (+) 429 WP_013448419.1 CopD family protein -
  NMO_RS09580 (NMO_1731) - 1866910..1867386 (+) 477 WP_015815895.1 CYTH domain-containing protein -
  NMO_RS09585 (NMO_1732) - 1867661..1868149 (-) 489 WP_015815896.1 dihydrofolate reductase -
  NMO_RS09590 (NMO_1733) aroG 1868217..1869272 (-) 1056 WP_015815897.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  NMO_RS09595 (NMO_1736) - 1869900..1870196 (+) 297 Protein_1805 hypothetical protein -
  NMO_RS13950 (NMO_1737) - 1870245..1870350 (-) 106 Protein_1806 IS1595 family transposase -
  NMO_RS14335 (NMO_1739) comE 1871075..1871539 (-) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16516.81 Da        Isoelectric Point: 10.8645

>NTDB_id=34995 NMO_RS14335 WP_162051247.1 1871075..1871539(-) (comE) [Neisseria meningitidis alpha14]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=34995 NMO_RS14335 WP_162051247.1 1871075..1871539(-) (comE) [Neisseria meningitidis alpha14]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGTCCGGCGAAGGCGAAGGCCATTGCGGAATACCGCGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGCATCGGCCCTGCGGTATTGGCGAAGCTGAAGGACCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment