Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMO_RS14325 Genome accession   NC_013016
Coordinates   1576810..1577274 (-) Length   154 a.a.
NCBI ID   WP_162051247.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571810..1582274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS08125 (NMO_1472) - 1573095..1573367 (-) 273 WP_002212673.1 ACT domain-containing protein -
  NMO_RS08130 (NMO_1473) - 1573492..1574229 (-) 738 WP_015815788.1 toxin-antitoxin system YwqK family antitoxin -
  NMO_RS08135 (NMO_1474) prmB 1574510..1575409 (-) 900 WP_048816228.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMO_RS08140 (NMO_1475) - 1575554..1576147 (+) 594 WP_015815790.1 hypothetical protein -
  NMO_RS14775 - 1576259..1576696 (+) 438 Protein_1540 HK97 family phage prohead protease -
  NMO_RS14325 (NMO_1477) comE 1576810..1577274 (-) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16516.81 Da        Isoelectric Point: 10.8645

>NTDB_id=34994 NMO_RS14325 WP_162051247.1 1576810..1577274(-) (comE) [Neisseria meningitidis alpha14]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=34994 NMO_RS14325 WP_162051247.1 1576810..1577274(-) (comE) [Neisseria meningitidis alpha14]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGTCCGGCGAAGGCGAAGGCCATTGCGGAATACCGCGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTTAAGGGCATCGGCCCTGCGGTATTGGCGAAGCTGAAGGACCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment