Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   A9460_RS03360 Genome accession   NZ_CP037746
Coordinates   671320..671973 (-) Length   217 a.a.
NCBI ID   WP_039665654.1    Uniprot ID   -
Organism   Campylobacter volucris strain 2014D-0083     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 666320..676973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9460_RS03335 (A9460_03335) - 666899..667135 (+) 237 WP_039665658.1 CDK5 domain-containing protein -
  A9460_RS03340 (A9460_03340) - 667132..667761 (+) 630 WP_052243176.1 hypothetical protein -
  A9460_RS08090 - 667750..667881 (-) 132 WP_256375836.1 hypothetical protein -
  A9460_RS03345 (A9460_03345) - 668120..668902 (+) 783 WP_039665657.1 HrcA family transcriptional regulator -
  A9460_RS03350 (A9460_03350) grpE 668899..669408 (+) 510 WP_039665656.1 nucleotide exchange factor GrpE -
  A9460_RS03355 (A9460_03355) dnaK 669430..671298 (+) 1869 WP_039665655.1 molecular chaperone DnaK -
  A9460_RS03360 (A9460_03360) CJE0566 671320..671973 (-) 654 WP_039665654.1 DNA/RNA endonuclease G Regulator
  A9460_RS03365 (A9460_03365) - 671970..672413 (-) 444 WP_039665653.1 GatB/YqeY domain-containing protein -
  A9460_RS03370 (A9460_03370) - 672413..673387 (-) 975 WP_039665652.1 exopolyphosphatase, Ppx/GppA family -
  A9460_RS03375 (A9460_03375) - 673443..674210 (+) 768 WP_039665651.1 pyridoxine 5'-phosphate synthase -
  A9460_RS03380 (A9460_03380) pdxA 674207..675307 (+) 1101 WP_039665650.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  A9460_RS03385 (A9460_03385) - 675350..676873 (+) 1524 WP_039665649.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25964.99 Da        Isoelectric Point: 9.9426

>NTDB_id=349864 A9460_RS03360 WP_039665654.1 671320..671973(-) (CJE0566) [Campylobacter volucris strain 2014D-0083]
MKKILSLCVLALSSFAYTQYELDPSFKKYFQNCSLLMDKYYYINCYDYTYKGTKAIAYKLEARILNQGHIKKRPKFSEDT
NIPKKYRTYWQDYIKSGYTRGHVVPNQSMNATPQAQLSTFLMSNVTPQKKDINAEIWNEIEQRERYLAKKNQELQVLNLI
LYDENPKRIKNNIAIPSFYIKILKAKNYSECYKVPNNDNFARFDRKYFKENCKKYIK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=349864 A9460_RS03360 WP_039665654.1 671320..671973(-) (CJE0566) [Campylobacter volucris strain 2014D-0083]
ATGAAAAAAATACTTTCTTTATGTGTTTTAGCTTTAAGTTCTTTTGCATACACCCAATACGAGCTTGACCCTAGTTTTAA
AAAGTATTTTCAAAACTGCTCATTGTTGATGGATAAGTATTATTATATTAATTGCTATGATTATACTTATAAAGGCACAA
AAGCAATAGCTTACAAACTTGAAGCTAGAATTTTAAACCAAGGACATATTAAAAAACGCCCTAAATTTTCAGAAGATACT
AATATACCGAAAAAATATAGAACTTATTGGCAAGATTATATAAAAAGTGGCTATACAAGAGGCCATGTAGTACCTAATCA
ATCCATGAATGCTACTCCACAAGCTCAGCTTAGTACTTTTTTAATGAGCAATGTTACTCCTCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATTGAGCAAAGAGAAAGATATCTAGCTAAGAAAAACCAAGAATTGCAAGTATTAAATTTAATA
CTTTATGATGAAAATCCAAAACGCATTAAAAATAATATAGCTATACCAAGTTTTTATATAAAAATTTTAAAAGCAAAAAA
TTATAGCGAATGTTATAAAGTCCCAAATAATGATAATTTTGCAAGATTTGATAGAAAGTATTTCAAAGAAAATTGTAAAA
AATATATAAAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment