Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJV01_RS03725 Genome accession   NZ_CP046061
Coordinates   780503..781000 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 775503..786000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS03710 bfr 775511..775975 (+) 465 WP_003093668.1 bacterioferritin -
  GJV01_RS03715 uvrA 776047..778884 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  GJV01_RS03720 - 779098..780486 (+) 1389 WP_003103910.1 MFS transporter -
  GJV01_RS03725 ssb 780503..781000 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  GJV01_RS03730 - 781131..782408 (+) 1278 WP_033865298.1 tyrosine-type recombinase/integrase -
  GJV01_RS03735 - 782401..783948 (+) 1548 WP_033865297.1 site-specific integrase -
  GJV01_RS03740 - 783941..784801 (+) 861 WP_154355053.1 hypothetical protein -
  GJV01_RS03745 - 784761..785993 (+) 1233 WP_154355054.1 integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=349864 GJV01_RS03725 WP_003114685.1 780503..781000(+) (ssb) [Pseudomonas aeruginosa strain 1811-13R031]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=349864 GJV01_RS03725 WP_003114685.1 780503..781000(+) (ssb) [Pseudomonas aeruginosa strain 1811-13R031]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515

Multiple sequence alignment