Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A9460_RS03300 Genome accession   NZ_CP037746
Coordinates   660600..661367 (+) Length   255 a.a.
NCBI ID   WP_039665664.1    Uniprot ID   A0AAE6CZP2
Organism   Campylobacter volucris strain 2014D-0083     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 655600..666367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9460_RS03285 (A9460_03285) - 656434..658374 (-) 1941 WP_039665667.1 ribonuclease R family protein -
  A9460_RS03290 (A9460_03290) ilvC 658487..659509 (+) 1023 WP_039665666.1 ketol-acid reductoisomerase -
  A9460_RS03295 (A9460_03295) - 659510..660616 (+) 1107 WP_039665665.1 divergent polysaccharide deacetylase family protein -
  A9460_RS03300 (A9460_03300) dprA 660600..661367 (+) 768 WP_039665664.1 DNA-processing protein DprA Machinery gene
  A9460_RS03305 (A9460_03305) ruvX 661364..661750 (+) 387 WP_039665663.1 Holliday junction resolvase RuvX -
  A9460_RS03310 (A9460_03310) - 661737..662623 (+) 887 Protein_648 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A9460_RS03315 (A9460_03315) rpsO 662820..663092 (-) 273 WP_039665662.1 30S ribosomal protein S15 -
  A9460_RS03320 (A9460_03320) - 663297..663701 (+) 405 WP_039665661.1 Rrf2 family transcriptional regulator -
  A9460_RS03325 (A9460_03325) flhA 663694..665853 (+) 2160 WP_039665660.1 flagellar biosynthesis protein FlhA -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28842.45 Da        Isoelectric Point: 8.2840

>NTDB_id=349863 A9460_RS03300 WP_039665664.1 660600..661367(+) (dprA) [Campylobacter volucris strain 2014D-0083]
MKSINNIKEFNSLKDPPANVYYKGNLELLKNRKIAIIGSRKMSVYTKNCIYELVNCCKSAQICIVSGGALGVDITAANAA
FPNTIAIFANGLDEIYPKSNKKYIEQIYEHALALSEHEAFYKPKPYDFLLRNRLIIALSEVVIIAQADLYSGSMQSARLA
LSMKKPIYVLPQRRQESEGTNLLLAKNQAKLLYDFSEFASMFGVLEEKSNNDELLEFIKKENNLDKILQKFGDRIYEYEL
EGLVEICGLSVRVKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=349863 A9460_RS03300 WP_039665664.1 660600..661367(+) (dprA) [Campylobacter volucris strain 2014D-0083]
ATGAAATCTATAAATAATATTAAAGAATTTAATTCTTTAAAAGATCCTCCAGCTAATGTGTATTATAAAGGAAATTTAGA
ACTTTTAAAAAATAGAAAAATAGCAATTATTGGCTCAAGAAAAATGAGTGTTTATACTAAAAATTGTATTTATGAGCTTG
TAAATTGTTGTAAAAGCGCACAAATTTGTATAGTAAGTGGTGGAGCTTTGGGGGTAGATATCACAGCTGCTAATGCTGCA
TTTCCAAATACTATAGCTATTTTTGCTAATGGTCTTGATGAAATTTATCCAAAAAGCAATAAAAAATATATCGAGCAAAT
TTATGAACATGCTTTAGCTTTAAGCGAACACGAAGCTTTTTATAAACCCAAGCCTTATGATTTTTTACTTAGAAATCGCC
TAATTATTGCTTTAAGCGAAGTTGTGATTATAGCTCAAGCTGATTTATATAGTGGTTCTATGCAGAGTGCAAGACTTGCT
TTAAGTATGAAAAAACCTATATATGTTTTACCTCAAAGAAGGCAAGAAAGTGAAGGTACAAATTTACTTCTAGCAAAAAA
TCAAGCTAAATTGCTTTATGATTTTTCTGAATTTGCTTCTATGTTTGGAGTTTTAGAAGAAAAAAGTAATAATGATGAGT
TGTTAGAATTTATTAAAAAAGAGAATAATTTAGATAAAATTTTGCAAAAATTTGGCGATAGAATTTATGAGTATGAGCTT
GAGGGTTTGGTTGAAATTTGTGGCTTGAGCGTGAGAGTTAAGTCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.948

91.373

0.584
  dprA Helicobacter pylori 26695

45.382

97.647

0.443

Multiple sequence alignment