Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   E0Z08_RS16815 Genome accession   NZ_CP037424
Coordinates   3381494..3385441 (-) Length   1315 a.a.
NCBI ID   WP_213075193.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376494..3390441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS16780 (E0Z08_16780) - 3377206..3378177 (+) 972 WP_131230717.1 esterase/lipase family protein -
  E0Z08_RS16785 (E0Z08_16785) rplS 3378237..3378611 (-) 375 WP_004691454.1 50S ribosomal protein L19 -
  E0Z08_RS16790 (E0Z08_16790) trmD 3378751..3379491 (-) 741 WP_094148539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  E0Z08_RS16795 (E0Z08_16795) rimM 3379519..3380067 (-) 549 WP_004978035.1 ribosome maturation factor RimM -
  E0Z08_RS16800 (E0Z08_16800) rpsP 3380096..3380353 (-) 258 WP_004718284.1 30S ribosomal protein S16 -
  E0Z08_RS16805 (E0Z08_16805) - 3380499..3380957 (-) 459 WP_130235324.1 type IV pilin protein -
  E0Z08_RS16810 (E0Z08_16810) - 3380951..3381484 (-) 534 WP_130235323.1 type IV pilin protein -
  E0Z08_RS16815 (E0Z08_16815) pilY1 3381494..3385441 (-) 3948 WP_213075193.1 PilC/PilY family type IV pilus protein Machinery gene
  E0Z08_RS16820 (E0Z08_16820) - 3385461..3386267 (-) 807 WP_130235322.1 PilX N-terminal domain-containing pilus assembly protein -
  E0Z08_RS16825 (E0Z08_16825) - 3386260..3387219 (-) 960 WP_130235321.1 PilW family protein -
  E0Z08_RS16830 (E0Z08_16830) pilV 3387219..3387737 (-) 519 WP_130235320.1 type IV pilus modification protein PilV Machinery gene
  E0Z08_RS16835 (E0Z08_16835) - 3387737..3387931 (-) 195 WP_131230719.1 hypothetical protein -
  E0Z08_RS16840 (E0Z08_16840) - 3387993..3388289 (-) 297 WP_131230721.1 Tfp pilus assembly protein FimT/FimU -
  E0Z08_RS16845 (E0Z08_16845) ispH 3388455..3389405 (-) 951 WP_004978047.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E0Z08_RS16850 (E0Z08_16850) gmk 3389540..3390163 (+) 624 WP_005401338.1 guanylate kinase -

Sequence

Protein


Download         Length: 1315 a.a.        Molecular weight: 141874.36 Da        Isoelectric Point: 5.8809

>NTDB_id=349702 E0Z08_RS16815 WP_213075193.1 3381494..3385441(-) (pilY1) [Acinetobacter johnsonii strain M19]
MQLKKIQMTILSASLTALMCSSVTQASDLQIYAMPTAGQKTIVMMVDVSGSMDWGMSGQNSTVTSLNPKRIEALKDGLRA
VLNSNDPKLENVVIGLGKYPGDGNSYSTDAQYMRGKILVEAKKLGPSTKTEGVFDSQQRRDMLAAVNAISVVGGTPTAHG
YTEAASYLMGTRTDNYNIEKDIVVYNQNLARTYEWGYGYRYYKCDKYLTNIDTSDSYNYYGCDKWTEISGSDFDKIGSDF
NEVYNDVRYYYKKNGTIKQTVSTNSSSYSGMAHSTGKVTTNGVEHYNSPLPAVENRVSCDGQGVYVLSDGVPNASSDENA
EKQMINALANPFINTSIPNFSCNVSSSDLSNPLTGGDSGGAWKCMGEFAKRLYSGVNPAGVKIQTAFVGYGGSFNSLSSD
DVKNACRLGSNPKGDVCSHYQADGLTKNTASYANHVEGYGNGGFYTANSANDVTTSVLNFIDNLGTDPLEPLPTGSLSVP
VDSLNPNGLQNLGYLRMLEPNPAQPSLLTWAGNLKKYTMQDGVLVDGTTNVFDTTGNFNTNTKNLWGARSLNDGGKVYVG
GTYEMLPMPTTTKTTALRNVMTDVGSATETALVPLITNNTNGTYDQAKSLLKIVKTENTISKEEVLNAFRNQTTLKDFPI
SIKLKLLNYLGFKVDTSLEAIPANDDVSYEGSPYTSMGGIIHSFPVQMTYSGRITATGELATDDITLPDGTILKPRNQSV
LYGSMEGGLHIVDAATGVEQMVFIPAEILNNTTASTALVKGGSGTPAPAHGVDAPWIVDSTYRTTGTYPKSQVNAIKMNV
YGGLRMGGSSYYGLDVLNPAEPKLKFRVGSDQADYTRMGQSWSKPVLIDIRYQGVPTRALVVGGGYDACYENPRFKLGTA
NPSEYQIKDSAGNVVDSCNKTEAKGNAVYVIDAETGKRLFWVSNTGSNANNADLKHSVVSRISTLDRDGDGYVDHLYFGD
LGGQIFRVDMNNYQTKSLTTTGGTTSTSYSNFGVRTVRLANLATTSTGTAITNGDNPRFYEPVTLTIHDEDSKTFIHVGA
ASGDRSTPLDVAPIKGREGLSPYVALTNRPTNRVYGVFDLDFMKEDLITNTALTGNYTSTTTETAVPTKNRLITRNLTLA
DLLGNPQTSITGNETIYSKFFSTTAPKHGWYRSLSWSWDYQVEGTGRELANNTFRQSGGLKAFEEPIAIGNNLFVPVYDP
EGTGVTPQNPCLPRVIGETDRQQYCLPFGVCVTAAGIINVAQEGGSGFRVKKVGDEYKNTNVIGKGIQGIALANNGGGGS
GSNSCGNYTLATLNDGVGNWQCTRVLNPTRWFEKR

Nucleotide


Download         Length: 3948 bp        

>NTDB_id=349702 E0Z08_RS16815 WP_213075193.1 3381494..3385441(-) (pilY1) [Acinetobacter johnsonii strain M19]
ATGCAACTCAAAAAAATCCAAATGACTATACTGAGTGCTTCTTTGACAGCACTGATGTGTAGTAGTGTCACTCAAGCAAG
TGACTTACAGATTTATGCTATGCCTACAGCAGGTCAAAAGACCATTGTTATGATGGTGGATGTTTCAGGTAGTATGGATT
GGGGGATGTCAGGCCAAAATTCAACTGTTACTTCTTTGAATCCGAAAAGAATTGAAGCTCTAAAAGATGGGTTGAGGGCA
GTTTTAAATAGTAATGATCCGAAATTAGAAAATGTAGTGATTGGTTTGGGTAAATATCCTGGCGATGGTAATAGTTATAG
CACAGACGCCCAATATATGAGGGGTAAAATTTTAGTGGAGGCGAAGAAGTTAGGTCCCTCAACTAAGACAGAAGGGGTGT
TTGACTCTCAACAGCGACGCGATATGCTGGCAGCTGTTAATGCTATATCTGTTGTTGGGGGAACGCCAACGGCACATGGT
TATACTGAAGCGGCTTCATATTTGATGGGAACGCGAACTGATAATTATAATATAGAGAAAGATATAGTTGTTTATAATCA
AAATCTTGCAAGAACCTATGAGTGGGGTTATGGTTATAGATATTATAAATGTGATAAATACTTAACAAATATCGATACCT
CTGATAGTTATAACTACTATGGTTGTGATAAGTGGACAGAAATTAGCGGTAGTGATTTTGATAAAATAGGCTCTGATTTT
AATGAGGTCTATAATGATGTTCGCTACTATTACAAAAAAAATGGAACAATTAAACAAACAGTTTCTACCAACTCTTCATC
ATATTCTGGGATGGCTCATTCCACTGGGAAAGTTACAACTAATGGTGTGGAACACTATAATTCACCTTTACCTGCTGTTG
AAAACCGTGTCTCATGTGATGGTCAAGGAGTATATGTTTTATCTGATGGGGTGCCGAATGCATCATCAGATGAGAATGCT
GAAAAACAGATGATAAACGCTTTGGCTAACCCTTTCATCAATACGAGTATTCCAAACTTTTCGTGTAATGTAAGTTCTAG
TGACTTATCTAATCCCTTAACTGGCGGTGATTCAGGTGGTGCATGGAAGTGTATGGGAGAGTTTGCTAAACGGTTATATT
CTGGGGTGAATCCAGCTGGTGTAAAAATCCAAACCGCTTTTGTGGGTTATGGTGGTAGCTTTAATAGCTTAAGTAGTGAT
GATGTAAAGAATGCTTGCCGATTAGGGTCTAACCCGAAAGGAGATGTGTGCTCGCACTATCAGGCAGATGGTTTAACTAA
AAATACGGCCTCATATGCAAACCATGTGGAAGGCTACGGCAATGGTGGATTTTATACAGCAAACTCTGCCAATGATGTCA
CGACAAGTGTACTTAACTTTATTGATAACTTAGGTACAGATCCTCTTGAACCGTTACCTACGGGGTCCTTATCTGTGCCT
GTCGATTCATTAAACCCCAATGGTTTGCAGAATCTGGGTTATTTACGGATGTTAGAACCGAATCCTGCACAGCCGAGTTT
ACTTACTTGGGCTGGGAATTTAAAAAAATACACAATGCAAGATGGTGTGCTGGTTGATGGAACAACCAATGTTTTTGATA
CGACAGGTAATTTTAATACAAATACTAAAAATTTATGGGGTGCACGATCACTGAATGATGGAGGAAAAGTTTATGTTGGA
GGGACATATGAAATGTTACCAATGCCAACAACGACAAAAACTACAGCTTTAAGAAATGTGATGACGGATGTTGGTAGCGC
AACAGAAACAGCATTAGTTCCATTGATTACAAATAATACCAATGGAACTTATGATCAAGCAAAATCACTTTTAAAAATTG
TTAAAACTGAAAATACAATTTCAAAAGAAGAAGTTTTAAATGCATTTAGAAATCAAACCACGCTTAAAGATTTTCCAATT
TCAATTAAATTAAAACTTTTAAATTATTTAGGTTTTAAAGTTGATACAAGTTTGGAGGCCATTCCTGCAAATGATGATGT
TAGTTATGAAGGGTCTCCGTATACATCTATGGGAGGAATTATTCATTCATTCCCTGTTCAAATGACTTATTCTGGACGAA
TTACTGCAACAGGTGAGCTTGCAACAGATGATATTACTCTACCAGATGGAACAATTTTAAAGCCACGTAATCAGTCCGTC
TTGTATGGTTCGATGGAGGGGGGCTTACATATTGTAGATGCTGCAACAGGTGTCGAACAAATGGTGTTTATCCCAGCGGA
AATTCTAAATAATACTACGGCATCTACTGCTTTGGTGAAAGGAGGTTCAGGAACACCCGCACCTGCGCATGGTGTAGATG
CGCCGTGGATTGTGGACTCTACTTATCGTACGACAGGGACATATCCAAAGTCTCAAGTAAATGCTATCAAAATGAATGTA
TATGGTGGCCTACGTATGGGCGGGAGTAGCTATTATGGTTTGGATGTACTGAATCCAGCTGAACCAAAGCTTAAATTTAG
AGTCGGTTCGGATCAAGCCGACTATACAAGAATGGGACAATCATGGTCTAAACCTGTGTTAATTGATATTCGTTATCAAG
GTGTACCGACACGAGCACTAGTTGTAGGTGGTGGCTATGATGCTTGTTATGAGAACCCACGGTTTAAATTAGGTACTGCA
AACCCTTCAGAATATCAAATAAAAGATTCTGCTGGAAATGTAGTAGATTCTTGCAATAAAACAGAAGCTAAAGGTAATGC
TGTATATGTGATTGATGCTGAAACTGGTAAGCGTTTGTTTTGGGTGAGTAATACAGGTTCTAATGCAAATAATGCCGATT
TAAAACACAGCGTAGTTTCACGTATTAGTACTTTAGACCGAGATGGTGATGGTTATGTCGATCATTTGTACTTTGGTGAC
TTAGGTGGTCAAATTTTCCGTGTAGATATGAATAACTATCAAACAAAAAGTTTAACAACAACGGGCGGAACAACGTCAAC
GTCATATTCGAACTTTGGTGTACGTACAGTTCGGTTGGCAAATTTGGCGACGACTAGCACGGGTACTGCAATTACAAATG
GTGATAATCCTCGTTTTTATGAACCAGTAACTTTAACTATTCATGATGAGGATAGTAAAACATTTATTCATGTTGGGGCC
GCTTCTGGGGACCGCAGCACACCACTAGATGTTGCTCCTATAAAAGGGCGTGAGGGTTTAAGTCCGTATGTTGCTTTAAC
AAATCGTCCAACCAATAGAGTTTACGGTGTGTTCGATCTAGATTTTATGAAAGAGGATTTAATTACCAATACAGCATTGA
CTGGAAATTATACTAGTACAACTACAGAAACTGCTGTACCAACAAAAAATCGCTTGATTACACGTAACTTAACCTTGGCT
GATTTATTAGGTAATCCACAAACAAGTATTACTGGAAATGAAACCATTTATAGTAAATTCTTTAGCACAACAGCGCCAAA
ACATGGTTGGTATCGTTCGCTTTCATGGAGTTGGGATTATCAAGTTGAAGGAACGGGACGAGAGTTAGCAAATAACACAT
TTAGACAGTCGGGTGGTTTAAAGGCATTTGAAGAGCCTATTGCGATTGGTAATAATCTATTCGTTCCTGTGTATGATCCC
GAAGGGACAGGTGTCACGCCTCAGAATCCTTGTTTACCACGTGTAATTGGTGAAACCGATCGACAGCAGTATTGTTTGCC
ATTTGGAGTTTGTGTGACCGCTGCAGGCATCATTAATGTGGCTCAAGAGGGAGGATCTGGATTTAGGGTAAAAAAAGTAG
GAGATGAATATAAAAATACCAATGTAATTGGTAAAGGTATCCAAGGTATAGCCCTTGCCAATAATGGTGGCGGTGGTAGT
GGTTCAAATAGTTGTGGTAATTATACTTTAGCTACATTGAATGATGGTGTGGGTAATTGGCAGTGTACCCGTGTGTTGAA
TCCAACGCGTTGGTTTGAGAAAAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(713-974)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

46.93

100

0.488

Multiple sequence alignment