Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   E0Z08_RS16830 Genome accession   NZ_CP037424
Coordinates   3387219..3387737 (-) Length   172 a.a.
NCBI ID   WP_130235320.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3382219..3392737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS16820 (E0Z08_16820) - 3385461..3386267 (-) 807 WP_130235322.1 PilX N-terminal domain-containing pilus assembly protein -
  E0Z08_RS16825 (E0Z08_16825) - 3386260..3387219 (-) 960 WP_130235321.1 PilW family protein -
  E0Z08_RS16830 (E0Z08_16830) pilV 3387219..3387737 (-) 519 WP_130235320.1 type IV pilus modification protein PilV Machinery gene
  E0Z08_RS16835 (E0Z08_16835) - 3387737..3387931 (-) 195 WP_131230719.1 hypothetical protein -
  E0Z08_RS16840 (E0Z08_16840) - 3387993..3388289 (-) 297 WP_131230721.1 Tfp pilus assembly protein FimT/FimU -
  E0Z08_RS16845 (E0Z08_16845) ispH 3388455..3389405 (-) 951 WP_004978047.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E0Z08_RS16850 (E0Z08_16850) gmk 3389540..3390163 (+) 624 WP_005401338.1 guanylate kinase -
  E0Z08_RS16855 (E0Z08_16855) rpoZ 3390241..3390522 (+) 282 WP_004978050.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18223.89 Da        Isoelectric Point: 7.5182

>NTDB_id=349703 E0Z08_RS16830 WP_130235320.1 3387219..3387737(-) (pilV) [Acinetobacter johnsonii strain M19]
MKNYNQQGIGLMEVLVALLLLSIGVLGYTALQVRAVEASTEAAQRSHAIFVLKGLAESIRANNAGRASYMALVNQAIPNT
ISTACINPTTAGCDATALARNDVQQAQANARNFGMRLRMENCPGTAGVAVADRRNCLFAGWGETDISQNTTQCMSAAGVY
VVGSNCLMMEVY

Nucleotide


Download         Length: 519 bp        

>NTDB_id=349703 E0Z08_RS16830 WP_130235320.1 3387219..3387737(-) (pilV) [Acinetobacter johnsonii strain M19]
ATGAAGAATTATAATCAACAAGGCATTGGACTTATGGAAGTTCTAGTGGCTTTGCTATTACTGTCGATAGGTGTGTTGGG
ATATACAGCACTGCAAGTCAGAGCTGTTGAAGCCTCTACAGAAGCAGCACAGAGATCTCACGCAATATTTGTATTAAAAG
GTTTGGCAGAAAGTATTAGGGCCAATAATGCGGGCAGAGCTTCGTATATGGCTTTGGTGAATCAAGCTATACCAAACACA
ATTTCTACAGCATGTATAAACCCAACAACTGCGGGATGTGATGCTACGGCATTAGCGAGAAATGATGTACAACAAGCACA
AGCAAATGCACGTAATTTTGGTATGCGTTTACGAATGGAAAATTGCCCAGGAACTGCAGGTGTTGCAGTGGCAGATCGTA
GAAACTGCCTTTTTGCGGGATGGGGGGAGACTGACATCAGTCAAAATACAACTCAGTGTATGAGTGCGGCTGGTGTTTAT
GTGGTTGGATCTAATTGTTTGATGATGGAGGTTTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

45.745

100

0.5

Multiple sequence alignment