Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E0Z08_RS16525 Genome accession   NZ_CP037424
Coordinates   3323407..3324054 (+) Length   215 a.a.
NCBI ID   WP_094148656.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain M19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3318407..3329054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z08_RS16505 (E0Z08_16505) - 3319539..3319916 (-) 378 WP_029575123.1 hypothetical protein -
  E0Z08_RS16510 (E0Z08_16510) - 3320101..3320334 (-) 234 WP_029575124.1 DUF6500 family protein -
  E0Z08_RS16515 (E0Z08_16515) - 3320526..3321341 (-) 816 WP_094148654.1 NAD-dependent epimerase/dehydratase family protein -
  E0Z08_RS16520 (E0Z08_16520) recG 3321375..3323420 (+) 2046 WP_131230677.1 ATP-dependent DNA helicase RecG -
  E0Z08_RS16525 (E0Z08_16525) comF 3323407..3324054 (+) 648 WP_094148656.1 ComF family protein Machinery gene
  E0Z08_RS16530 (E0Z08_16530) - 3324055..3324459 (-) 405 WP_131230679.1 NUDIX hydrolase -
  E0Z08_RS16535 (E0Z08_16535) - 3324456..3325055 (-) 600 WP_094148658.1 TIGR00730 family Rossman fold protein -
  E0Z08_RS16540 (E0Z08_16540) - 3325208..3326221 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  E0Z08_RS16545 (E0Z08_16545) - 3326304..3326591 (-) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  E0Z08_RS16550 (E0Z08_16550) - 3326603..3327238 (-) 636 WP_087527364.1 phospholipid-binding protein MlaC -
  E0Z08_RS16555 (E0Z08_16555) - 3327259..3327933 (-) 675 WP_004691366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  E0Z08_RS16560 (E0Z08_16560) mlaE 3327933..3328712 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24844.08 Da        Isoelectric Point: 9.4138

>NTDB_id=349701 E0Z08_RS16525 WP_094148656.1 3323407..3324054(+) (comF) [Acinetobacter johnsonii strain M19]
MPMFSHLLHTAKQLLHKAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTVEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQFNVPIWQPVIRLHQHSQKGLSRLERLDQIQQQ
FKIDPQQRQYAKLYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=349701 E0Z08_RS16525 WP_094148656.1 3323407..3324054(+) (comF) [Acinetobacter johnsonii strain M19]
ATGCCTATGTTTAGTCATTTACTGCACACTGCCAAACAGTTGCTACACAAAGCACAGCCTTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTGCATTCGGTCTGTCTGGACTGCTGGCAACAACTTCCACTGCATCCACAGACCGTTGAAAAACAAGAGC
TGAGCATTCATGTCGCAGGACAGTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTTCCGATGCCGATTTCGAC
CCAGCGTTTAGCGGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGTTCAATGTTCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTAGAACGCTTAGATCAAATTCAACAACAG
TTTAAAATCGATCCTCAGCAGCGCCAGTACGCAAAACTCTACCGGCGTGTTTTGATATTAGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.216

90.233

0.516
  comF Acinetobacter baumannii D1279779

57.216

90.233

0.516

Multiple sequence alignment