Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GJ664_RS05525 Genome accession   NZ_CP046037
Coordinates   1140997..1141593 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain CBA3614     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135997..1146593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ664_RS05495 (GJ664_05495) - 1136876..1137481 (+) 606 WP_016264615.1 class I SAM-dependent methyltransferase -
  GJ664_RS05500 (GJ664_05500) - 1137554..1137898 (+) 345 WP_016264616.1 hypothetical protein -
  GJ664_RS05505 (GJ664_05505) tadA 1137979..1138497 (+) 519 WP_011374044.1 tRNA adenosine(34) deaminase TadA -
  GJ664_RS05515 (GJ664_05515) dnaX 1138921..1140636 (+) 1716 WP_094365889.1 DNA polymerase III subunit gamma/tau -
  GJ664_RS05520 (GJ664_05520) - 1140663..1140971 (+) 309 WP_016264619.1 YbaB/EbfC family nucleoid-associated protein -
  GJ664_RS05525 (GJ664_05525) recR 1140997..1141593 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  GJ664_RS05530 (GJ664_05530) - 1141610..1141864 (+) 255 WP_011374048.1 YaaL family protein -
  GJ664_RS05535 (GJ664_05535) tmk 1142007..1142651 (+) 645 WP_016264620.1 dTMP kinase -
  GJ664_RS05540 (GJ664_05540) - 1142666..1142995 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  GJ664_RS05545 (GJ664_05545) holB 1142999..1143991 (+) 993 WP_035147293.1 DNA polymerase III subunit delta' -
  GJ664_RS05550 (GJ664_05550) - 1144043..1144396 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  GJ664_RS05555 (GJ664_05555) rsmI 1144495..1145373 (+) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GJ664_RS05560 (GJ664_05560) - 1145384..1146130 (+) 747 WP_035147289.1 acyl-[acyl-carrier-protein] thioesterase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=349700 GJ664_RS05525 WP_011374047.1 1140997..1141593(+) (recR) [Latilactobacillus sakei strain CBA3614]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=349700 GJ664_RS05525 WP_011374047.1 1140997..1141593(+) (recR) [Latilactobacillus sakei strain CBA3614]
ATGCAATATCCAGAACCAATTGCGAAGCTAATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCCGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCAGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48