Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   EYS44_RS12060 Genome accession   NZ_CP037417
Coordinates   2509024..2509338 (-) Length   104 a.a.
NCBI ID   WP_015388003.1    Uniprot ID   -
Organism   Bacillus velezensis strain LB002     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504024..2514338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYS44_RS12015 (EYS44_12010) sinI 2504706..2504879 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  EYS44_RS12020 (EYS44_12015) sinR 2504913..2505248 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  EYS44_RS12025 (EYS44_12020) - 2505296..2506081 (-) 786 WP_015388008.1 TasA family protein -
  EYS44_RS12030 (EYS44_12025) - 2506145..2506729 (-) 585 WP_003153100.1 signal peptidase I -
  EYS44_RS12035 (EYS44_12030) tapA 2506701..2507372 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  EYS44_RS12040 (EYS44_12035) - 2507632..2507961 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  EYS44_RS12045 (EYS44_12040) - 2508001..2508180 (-) 180 WP_003153093.1 YqzE family protein -
  EYS44_RS12050 (EYS44_12045) comGG 2508237..2508614 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  EYS44_RS12055 (EYS44_12050) comGF 2508615..2509115 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  EYS44_RS12060 (EYS44_12055) comGE 2509024..2509338 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  EYS44_RS12065 (EYS44_12060) comGD 2509322..2509759 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  EYS44_RS12070 (EYS44_12065) comGC 2509749..2510015 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  EYS44_RS12075 (EYS44_12070) comGB 2510062..2511099 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  EYS44_RS12080 (EYS44_12075) comGA 2511086..2512156 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  EYS44_RS12085 (EYS44_12080) - 2512348..2513298 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11844.85 Da        Isoelectric Point: 6.9470

>NTDB_id=349635 EYS44_RS12060 WP_015388003.1 2509024..2509338(-) (comGE) [Bacillus velezensis strain LB002]
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTGMLTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCAADRGEKEMCLSILKTDWLYAS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=349635 EYS44_RS12060 WP_015388003.1 2509024..2509338(-) (comGE) [Bacillus velezensis strain LB002]
ATGCTAAACGGAAATAAAGGGTTCTCTACTATTGAAACACTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGGCATGCTGACAGACGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTGCGGCTGACCGCGGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

43.478

100

0.481

Multiple sequence alignment