Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NMO_RS02030 Genome accession   NC_013016
Coordinates   398064..398663 (-) Length   199 a.a.
NCBI ID   WP_002214520.1    Uniprot ID   Q4W563
Organism   Neisseria meningitidis alpha14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393064..403663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS02015 (NMO_0366) pilQ 394549..396834 (-) 2286 WP_002214524.1 type IV pilus secretin PilQ Machinery gene
  NMO_RS02020 (NMO_0367) pilP 396853..397398 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  NMO_RS02025 (NMO_0368) - 397416..398063 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMO_RS02030 (NMO_0369) pilN 398064..398663 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMO_RS02035 (NMO_0370) pilM 398666..399781 (-) 1116 WP_015815297.1 type IV pilus biogenesis protein PilM -
  NMO_RS02040 (NMO_0371) - 399933..402329 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -
  NMO_RS02045 (NMO_0372) yihA 402414..403079 (-) 666 WP_015815298.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22257.48 Da        Isoelectric Point: 9.5493

>NTDB_id=34957 NMO_RS02030 WP_002214520.1 398064..398663(-) (pilN) [Neisseria meningitidis alpha14]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=34957 NMO_RS02030 WP_002214520.1 398064..398663(-) (pilN) [Neisseria meningitidis alpha14]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4W563

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

100

100

1

Multiple sequence alignment