Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NMO_RS02020 Genome accession   NC_013016
Coordinates   396853..397398 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis alpha14     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391853..402398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS02010 (NMO_0365) - 392961..393473 (-) 513 WP_002222978.1 shikimate kinase -
  NMO_RS02015 (NMO_0366) pilQ 394549..396834 (-) 2286 WP_002214524.1 type IV pilus secretin PilQ Machinery gene
  NMO_RS02020 (NMO_0367) pilP 396853..397398 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  NMO_RS02025 (NMO_0368) - 397416..398063 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMO_RS02030 (NMO_0369) pilN 398064..398663 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMO_RS02035 (NMO_0370) pilM 398666..399781 (-) 1116 WP_015815297.1 type IV pilus biogenesis protein PilM -
  NMO_RS02040 (NMO_0371) - 399933..402329 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=34956 NMO_RS02020 WP_002214522.1 396853..397398(-) (pilP) [Neisseria meningitidis alpha14]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=34956 NMO_RS02020 WP_002214522.1 396853..397398(-) (pilP) [Neisseria meningitidis alpha14]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGACCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTAATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1

Multiple sequence alignment