Detailed information NTG0349360

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LAJLEIBI_RS02030
• Genome accession: NZ_CP036524
• Coordinates: 427895..429247 (+)
• Length: 450 a.a.
• NCBI ID: WP_006444194.1
• Uniprot ID: -
• Organism: [Clostridium] hylemonae DSM 15053
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 422895..434247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAJLEIBI_RS02010 (LAJLEIBI_00397)	ald	423093..424208 (+)	1116	WP_006444198.1	alanine dehydrogenase	-
LAJLEIBI_RS02015 (LAJLEIBI_00398)	-	424433..424801 (+)	369	WP_040435883.1	GntR family transcriptional regulator	-
LAJLEIBI_RS02020 (LAJLEIBI_00399)	-	424861..427299 (+)	2439	WP_006444196.1	ATP-dependent Clp protease ATP-binding subunit	-
LAJLEIBI_RS02025 (LAJLEIBI_00400)	-	427356..427769 (+)	414	WP_006444195.1	hypothetical protein	-
LAJLEIBI_RS02030 (LAJLEIBI_00401)	radA	427895..429247 (+)	1353	WP_006444194.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 49162.94 Da
• Isoelectric Point: 6.9211

>NTDB_id=349360 LAJLEIBI_RS02030 WP_006444194.1 427895..429247(+) (radA) [[Clostridium] hylemonae DSM 15053]
MAKGKKSIFFCQNCGHEEGKWLGQCPACKEWNTFVEEKVTAARPGAARQMKEAEVVALSGVSTDEEARIKTTIEEMDRVL
GGGIVPGSLVLVGGDPGIGKSTLLLQVCQKLSQEKEILYISGEESLAQIKLRANRMGPFKDNLLLLCETNLELIRSVIEK
RRPQLVVIDSIQTMYSEEVASAPGSVSQVRESTNVFMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDRH
ASYRILRGVKNRFGSTNEIGVFEMRQDGLQEVANPSEYMLSGRPENSSGSVVACSMEGTRPILIEIQALVCQSNFGMPRR
TAAGTDYNRVNLLMAVLEKRAGLHLSNYDAYVNIAGGIKMNEPAIDLGIVMALISSYKNRPIDEKMIVFGEVGLSGEVRA
VNMPEQRVAEAKKLGFETCVLPEVSRDLVKGVKGIRLVGVKTINEVLSLL

Nucleotide

• Length: 1353 bp

>NTDB_id=349360 LAJLEIBI_RS02030 WP_006444194.1 427895..429247(+) (radA) [[Clostridium] hylemonae DSM 15053]
ATGGCAAAGGGGAAAAAGAGTATATTTTTCTGCCAGAACTGCGGACATGAAGAGGGCAAATGGCTGGGCCAGTGTCCGGC
CTGTAAAGAATGGAATACGTTTGTAGAAGAGAAAGTGACGGCGGCCAGACCAGGCGCCGCAAGGCAGATGAAAGAGGCCG
AAGTGGTGGCGCTGTCCGGTGTATCTACGGATGAGGAGGCCAGGATAAAGACGACGATCGAGGAGATGGACCGGGTGCTC
GGCGGCGGGATCGTCCCCGGTTCCCTCGTACTTGTAGGGGGAGACCCGGGCATCGGAAAGTCTACGCTTCTCCTGCAGGT
ATGTCAGAAACTATCGCAGGAAAAAGAAATATTATATATATCGGGAGAGGAATCGCTGGCCCAGATAAAGCTGCGCGCAA
ACCGGATGGGGCCATTCAAAGACAACCTTCTGCTTCTGTGCGAGACTAACCTGGAGCTGATACGTTCAGTGATAGAAAAA
CGGCGCCCGCAGCTTGTGGTGATCGATTCGATCCAGACAATGTACAGTGAGGAGGTGGCGTCCGCACCGGGAAGCGTATC
CCAGGTTAGAGAGTCGACGAACGTGTTCATGCAGCTGGCCAAGGGGCTTGGCATCTCCATATTTATCGTGGGACATGTGA
CGAAGGAAGGGACGGTGGCAGGGCCCCGCGTGCTGGAACATATGGTGGATACAGTTCTCTATTTTGAAGGGGACCGCCAC
GCATCCTACCGTATCCTGCGCGGCGTTAAGAACCGTTTCGGCTCAACCAACGAGATAGGCGTGTTTGAGATGCGGCAGGA
CGGACTGCAGGAAGTTGCCAATCCGTCGGAATATATGCTGAGCGGCCGGCCGGAAAATTCCTCCGGTTCTGTTGTAGCCT
GTTCCATGGAAGGAACGAGGCCTATCCTCATAGAGATCCAGGCGCTGGTCTGCCAAAGTAACTTCGGTATGCCGAGACGT
ACGGCCGCAGGCACGGACTACAACCGTGTGAACCTGCTGATGGCAGTGCTGGAAAAAAGGGCGGGCCTGCATCTGTCCAA
TTACGATGCCTATGTAAATATCGCGGGTGGAATTAAGATGAATGAGCCGGCCATAGATCTGGGCATTGTTATGGCTCTCA
TCTCCAGTTATAAAAACCGTCCTATTGATGAGAAAATGATCGTATTCGGAGAGGTAGGACTGAGCGGTGAAGTAAGGGCC
GTCAATATGCCGGAGCAGAGAGTGGCTGAGGCAAAAAAGCTCGGGTTCGAGACGTGCGTGTTGCCGGAAGTGTCGAGAGA
CCTGGTGAAGGGAGTGAAAGGCATCCGCCTTGTCGGGGTTAAGACGATAAATGAGGTGTTATCCCTTTTATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (341-423)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• AAA domain (AAA_25) (64-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.048	100	0.576
radA	Streptococcus mitis NCTC 12261	55.679	99.778	0.556
radA	Streptococcus pneumoniae Rx1	55.679	99.778	0.556
radA	Streptococcus pneumoniae D39	55.679	99.778	0.556
radA	Streptococcus pneumoniae R6	55.679	99.778	0.556
radA	Streptococcus pneumoniae TIGR4	55.679	99.778	0.556
radA	Streptococcus mitis SK321	55.457	99.778	0.553