Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EYB46_RS13110 Genome accession   NZ_CP036518
Coordinates   2669869..2670558 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain ANSB01E     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2664869..2675558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB46_RS13085 (EYB46_13080) degS 2665153..2666316 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EYB46_RS13090 (EYB46_13085) degU 2666393..2667082 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EYB46_RS13095 (EYB46_13090) - 2667180..2668028 (+) 849 WP_032876160.1 DegV family protein -
  EYB46_RS13100 (EYB46_13095) - 2668137..2669521 (+) 1385 Protein_2517 DEAD/DEAH box helicase -
  EYB46_RS13105 (EYB46_13100) - 2669579..2669863 (+) 285 WP_003151389.1 competence protein ComFB -
  EYB46_RS13110 (EYB46_13105) comFC 2669869..2670558 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  EYB46_RS13115 (EYB46_13110) - 2670632..2671051 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  EYB46_RS13120 (EYB46_13115) flgM 2671121..2671387 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EYB46_RS13125 (EYB46_13120) - 2671402..2671884 (+) 483 WP_032876168.1 flagellar protein FlgN -
  EYB46_RS13130 (EYB46_13125) flgK 2671900..2673417 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  EYB46_RS13135 (EYB46_13130) flgL 2673429..2674346 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  EYB46_RS13140 (EYB46_13135) - 2674437..2675006 (+) 570 WP_007407476.1 DUF6470 family protein -
  EYB46_RS13145 (EYB46_13140) fliW 2675036..2675467 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=349321 EYB46_RS13110 WP_196770545.1 2669869..2670558(+) (comFC) [Bacillus velezensis strain ANSB01E]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=349321 EYB46_RS13110 WP_196770545.1 2669869..2670558(+) (comFC) [Bacillus velezensis strain ANSB01E]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment