Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   EZZ25_RS16250 Genome accession   NZ_CP036500
Coordinates   425727..426896 (-) Length   389 a.a.
NCBI ID   WP_088124717.1    Uniprot ID   -
Organism   Vibrio cholerae strain 20000     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 420727..431896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS16245 (EZZ25_16245) cqsS 423564..425624 (+) 2061 WP_088124718.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  EZZ25_RS16250 (EZZ25_16250) cqsA 425727..426896 (-) 1170 WP_088124717.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EZZ25_RS16255 (EZZ25_16255) - 427093..428055 (-) 963 WP_001104009.1 TDT family transporter -
  EZZ25_RS16260 (EZZ25_16260) clcA 428202..429608 (-) 1407 WP_088124716.1 H(+)/Cl(-) exchange transporter ClcA -
  EZZ25_RS16265 (EZZ25_16265) - 430073..431062 (+) 990 WP_088124715.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43564.63 Da        Isoelectric Point: 6.2272

>NTDB_id=349247 EZZ25_RS16250 WP_088124717.1 425727..426896(-) (cqsA) [Vibrio cholerae strain 20000]
MNKPQLPDFIQDKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEKIAKIIEVCSDAVNCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=349247 EZZ25_RS16250 WP_088124717.1 425727..426896(-) (cqsA) [Vibrio cholerae strain 20000]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
TGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTCTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAATGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACCAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGAATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACGTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGCAAAGAGTTTGGCTGTGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACTGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGAGATTATTGAATCTGCGGATAATCGTCGTCAGCATTTAG
ATCGTATGGCAAGAAAATTACGCATAGGATTATCCCAGCTGGGATTAACCATTCGCAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCAAAGAATAAAAACATTATTCGCTTATCACTCAATAGTGATGTGAACGATGAGAAAATCGCCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGCAGTGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99

Multiple sequence alignment