Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EZZ25_RS13305 Genome accession   NZ_CP036499
Coordinates   2823554..2824921 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain 20000     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818554..2829921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS13270 (EZZ25_13270) moaE 2819267..2819728 (-) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -
  EZZ25_RS13275 (EZZ25_13275) moaD 2819730..2819975 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  EZZ25_RS13280 (EZZ25_13280) moaC 2819972..2820451 (-) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  EZZ25_RS13285 (EZZ25_13285) moaB 2820462..2820974 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  EZZ25_RS13290 (EZZ25_13290) moaA 2821034..2822023 (-) 990 WP_088124600.1 GTP 3',8-cyclase MoaA -
  EZZ25_RS13295 (EZZ25_13295) - 2822330..2823220 (+) 891 WP_000061070.1 YvcK family protein -
  EZZ25_RS13300 (EZZ25_13300) luxU 2823209..2823550 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  EZZ25_RS13305 (EZZ25_13305) luxO 2823554..2824921 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EZZ25_RS13315 (EZZ25_13315) uvrB 2825351..2827381 (-) 2031 WP_000029988.1 excinuclease ABC subunit UvrB -
  EZZ25_RS13325 (EZZ25_13325) rsxA 2828263..2828844 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  EZZ25_RS13330 (EZZ25_13330) rsxB 2828844..2829431 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=349243 EZZ25_RS13305 WP_001888250.1 2823554..2824921(-) (luxO) [Vibrio cholerae strain 20000]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=349243 EZZ25_RS13305 WP_001888250.1 2823554..2824921(-) (luxO) [Vibrio cholerae strain 20000]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAATGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATTGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACACTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACTAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment