Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TERTU_RS16495 Genome accession   NC_012997
Coordinates   4107792..4109159 (-) Length   455 a.a.
NCBI ID   WP_015818489.1    Uniprot ID   C5BSA3
Organism   Teredinibacter turnerae T7901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4102792..4114159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERTU_RS16475 (TERTU_3715) - 4103371..4104492 (-) 1122 WP_015820542.1 PQQ-dependent sugar dehydrogenase -
  TERTU_RS16480 (TERTU_3716) - 4104666..4105091 (+) 426 WP_015817610.1 MarR family winged helix-turn-helix transcriptional regulator -
  TERTU_RS16485 (TERTU_3717) - 4105113..4106174 (+) 1062 WP_015819640.1 HlyD family secretion protein -
  TERTU_RS16490 (TERTU_3718) - 4106171..4107703 (+) 1533 WP_015817995.1 DHA2 family efflux MFS transporter permease subunit -
  TERTU_RS16495 (TERTU_3719) radA 4107792..4109159 (-) 1368 WP_015818489.1 DNA repair protein RadA Machinery gene
  TERTU_RS16500 - 4109509..4109865 (+) 357 WP_041590292.1 hypothetical protein -
  TERTU_RS16505 (TERTU_3722) - 4109915..4110991 (+) 1077 WP_015820446.1 hypothetical protein -
  TERTU_RS16510 (TERTU_3723) - 4111074..4112156 (+) 1083 WP_015820844.1 phage tail sheath subtilisin-like domain-containing protein -
  TERTU_RS16515 (TERTU_3724) - 4112169..4112666 (+) 498 WP_015820394.1 hypothetical protein -
  TERTU_RS16520 (TERTU_3725) - 4112678..4113226 (+) 549 WP_015820687.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48378.85 Da        Isoelectric Point: 6.9988

>NTDB_id=34919 TERTU_RS16495 WP_015818489.1 4107792..4109159(-) (radA) [Teredinibacter turnerae T7901]
MAKAKTAYVCNDCGADFAKWQGQCTECGAWNTLKEVRLGSSVKTSASGGRSGYAGSLEAKVTPLAEINLEELPRFSSTLE
EFDRVLGGGFVPGSVVLIGGHPGAGKSTVLLQVLCQLAQQQDALYVTGEESLQQVAMRASRLGLPTANLQMLSATDVDAV
VQAAAQVKPKIMVVDSIQVMHQAEIQSAPGSVSQVRECAAELTRFAKQSGTVLILVGHVTKDGSLAGPKVLEHIIDCSIM
LEGSHDSRFRTLRGIKNRFGAVNELGVFAMTEQGLKEVSNPSAIFLQRGDEVSSGSVVMVVWEGTRPLLVEIQALVDASS
LGNPRRVAVGLEQNRLSMLLAILHRHGGLMVGDQDVFVNVVGGVKIMEPSADLALLFALVSSFRDHPLPRELVVFGEVGL
AGEIRPVPSGQERIREAAKHGFKKAIVPHGNAPREPIKGMEVVVVKKLSEALGAI

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=34919 TERTU_RS16495 WP_015818489.1 4107792..4109159(-) (radA) [Teredinibacter turnerae T7901]
TTGGCTAAAGCGAAAACTGCGTATGTTTGTAATGATTGTGGCGCTGACTTTGCCAAATGGCAGGGCCAATGTACGGAGTG
CGGGGCCTGGAATACCTTAAAAGAGGTGCGCCTGGGTAGCAGCGTGAAAACAAGCGCGAGTGGCGGTCGCAGTGGGTATG
CAGGCAGCCTGGAAGCCAAGGTCACGCCACTGGCGGAGATCAATCTGGAAGAGTTGCCGCGTTTCAGCTCAACCCTCGAG
GAATTCGATCGCGTGTTGGGCGGTGGCTTTGTGCCGGGTTCCGTGGTGTTGATTGGCGGTCACCCAGGTGCCGGGAAGTC
GACCGTGTTACTGCAGGTACTTTGCCAGTTGGCGCAGCAGCAGGATGCACTCTACGTCACGGGTGAGGAATCGCTGCAGC
AGGTCGCCATGCGGGCGTCGCGGCTCGGTTTGCCCACCGCAAACTTGCAAATGTTGTCGGCAACGGATGTGGACGCGGTT
GTCCAGGCGGCCGCTCAGGTCAAACCCAAAATCATGGTGGTGGACTCGATTCAGGTGATGCACCAGGCGGAAATTCAATC
GGCGCCAGGCAGTGTGTCGCAGGTGCGCGAGTGTGCCGCCGAGTTGACGCGCTTTGCCAAGCAGTCGGGCACGGTGCTAA
TTCTCGTCGGCCACGTCACTAAAGACGGTTCTCTGGCCGGGCCAAAAGTGCTCGAACATATTATCGACTGTTCGATAATG
CTCGAAGGCTCCCACGACTCCCGGTTTCGCACCCTGCGCGGAATCAAAAATCGCTTTGGCGCAGTGAATGAACTCGGTGT
GTTTGCGATGACCGAGCAGGGCTTGAAGGAAGTTTCAAACCCATCGGCAATTTTTTTGCAGCGCGGTGACGAGGTGTCCA
GTGGTTCGGTGGTGATGGTGGTGTGGGAAGGCACGCGACCCTTGCTGGTGGAGATACAAGCGTTGGTGGATGCGTCCAGT
TTGGGGAATCCGCGTCGGGTTGCGGTGGGGCTTGAGCAAAACCGGTTGTCCATGTTGCTTGCCATTTTGCATCGACACGG
CGGTTTGATGGTGGGCGATCAGGATGTGTTTGTGAATGTGGTTGGCGGGGTGAAAATTATGGAGCCCAGCGCCGACCTCG
CACTTTTGTTTGCGCTGGTGTCGAGTTTTCGCGATCACCCCTTACCGCGTGAGCTGGTGGTGTTCGGGGAGGTCGGGCTG
GCCGGTGAAATTCGCCCGGTACCCAGCGGTCAGGAGCGCATTCGCGAGGCGGCCAAACACGGATTTAAAAAAGCCATCGT
GCCCCACGGCAACGCCCCGCGCGAACCCATTAAAGGAATGGAAGTGGTGGTGGTAAAAAAACTGAGCGAGGCGTTGGGGG
CGATTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-223)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BSA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.486
  radA Streptococcus pneumoniae Rx1

43.818

100

0.444
  radA Streptococcus pneumoniae R6

43.818

100

0.444
  radA Streptococcus pneumoniae TIGR4

43.818

100

0.444
  radA Streptococcus pneumoniae D39

43.818

100

0.444
  radA Streptococcus mitis NCTC 12261

44.201

100

0.444
  radA Streptococcus mitis SK321

43.982

100

0.442

Multiple sequence alignment