Detailed information NTG0034911

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SYNGTI_RS05150
• Genome accession: NC_017038
• Coordinates: 1099316..1100470 (-)
• Length: 384 a.a.
• NCBI ID: WP_010872202.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. GT-I
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1094316..1105470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNGTI_RS05105 (SYNGTI_0993)	ribH	1094751..1095245 (-)	495	WP_010872197.1	6,7-dimethyl-8-ribityllumazine synthase	-
SYNGTI_RS05110 (SYNGTI_0994)	psbZ	1095350..1095538 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
SYNGTI_RS16705 (SYNGTI_0995)	-	1095874..1096785 (-)	912	WP_010872199.1	M48 family metallopeptidase	-
SYNGTI_RS17735	-	1096960..1097091 (+)	132	WP_255345285.1	hypothetical protein	-
SYNGTI_RS05135 (SYNGTI_0996)	-	1097179..1098165 (+)	987	WP_010872200.1	S1 RNA-binding domain-containing protein	-
SYNGTI_RS16710 (SYNGTI_0997)	-	1098425..1099273 (+)	849	WP_010872201.1	IS630-like element ISTcSa family transposase	-
SYNGTI_RS05150 (SYNGTI_0998)	recF	1099316..1100470 (-)	1155	WP_010872202.1	DNA replication/repair protein RecF	Machinery gene
SYNGTI_RS05155 (SYNGTI_0999)	-	1100512..1102116 (-)	1605	WP_010872203.1	ABC transporter ATP-binding protein	-
SYNGTI_RS05160 (SYNGTI_1000)	pyk	1102385..1104160 (-)	1776	WP_010872204.1	pyruvate kinase	-
SYNGTI_RS05165 (SYNGTI_1001)	-	1104348..1104749 (+)	402	WP_010872205.1	DUF1824 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43743.84 Da
• Isoelectric Point: 6.3184

>NTDB_id=34911 SYNGTI_RS05150 WP_010872202.1 1099316..1100470(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-I]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAANGQIKALLERQYSV
AELEIDLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETGLALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVTWV
GDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLSRFDDRWRRSAQILKVNAGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=34911 SYNGTI_RS05150 WP_010872202.1 1099316..1100470(-) (recF) [Synechocystis sp. PCC 6803 substr. GT-I]
ATGTACCTGAAAAAACTCTATTTACGGGCCTTTCGCAATTACCTCGAAGAAGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGGAAATCTAACTTATTGGAAGCGGTGGAACTGTTGGCAACGCTCAAAAGCCATCGCA
CTAGTCGGGATCAGGAATTGGTGCTAGACGGGGCGGCCAATGGGCAAATTAAAGCCCTACTGGAAAGGCAATACAGTGTG
GCGGAGTTAGAAATTGACCTACGGCGATCGGGGCGGCGCAACCTACGCATTAACCAAAATCAATGTCGTCGTCAGTTGGA
TTTTTTAGGCTGTTTAAATGCGGTGGAATTTTCCTGTTTAGATTTGGATTTAGTCCGGGGAGCGCCCGATTGTCGCCGTC
AATGGCTAGATACTTTGTTAACCCAGCTAGAACCCCTCTATGCCCATCTGTTGGGGCAGTACCAGCACATTGTTAAGCAA
AGAAATGCTCTACTAAAAAGCCTACGACAACAATGGGAAACGGGACTAGCTTTGGGGGAAGAGTCGACAGCTTCTTTGTC
TCTCTGGGACCAGCAGTTGGTGGAAATGGGCACTAGGGTAGTCCGCCGTCGGGCGAGGGGTTTAGCCCGTCTTGCTCCTT
TGGCCCAGGAATGGCATGGGCGCATTAGCGGTGGCAATGAAACCCTGACCGTTACCTATCAACCCAATGTCACCTGGGTG
GGGGATGATCCGGAAGTGGTGCACCAGGCTTTTTTAGAAAAATTAGCCCAACGGCGATCGGCAGAATTACATCTGGGGAC
AACGGTGGTGGGGCCCCATCGGGACGAAGTGGGGTTTGTCCTCGACGACACTCCCGCTAGAACCTATGGCTCCCAGGGAC
AGCAAAGAACTCTAGTCCTAGCATTAAAATTGGCGGAATTGAGCTTGATTGAAACGGTTATTGGAGAACCACCACTGTTG
TTATTGGACGATGTCTTGGCGGAATTAGACCTCGATCGCCAGGGACAATTGTTAATGGCCATTGAGGATCGTTTTCAAAC
CCTGATCACCACCACCCATTTAAGTCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATTCTCAAAGTTAATGCTGGTC
AACTAGAGGAACGGTGGCCGTCCGAAATTGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.727	98.177	0.38
recF	Streptococcus pneumoniae R6	39.266	92.188	0.362