Detailed information NTG0034905

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: TERTU_RS04645
• Genome accession: NC_012997
• Coordinates: 1097270..1098655 (-)
• Length: 461 a.a.
• NCBI ID: WP_015820830.1
• Uniprot ID: C5BQY2
• Organism: Teredinibacter turnerae T7901
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1092270..1103655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TERTU_RS04635 (TERTU_1048)	-	1095992..1096435 (+)	444	WP_015817513.1	type IV pilin protein	-
TERTU_RS04640 (TERTU_1049)	-	1096573..1097151 (-)	579	WP_015816919.1	GspH/FimT family pseudopilin	-
TERTU_RS04645 (TERTU_1050)	pilR	1097270..1098655 (-)	1386	WP_015820830.1	sigma-54-dependent transcriptional regulator	Regulator
TERTU_RS04650 (TERTU_1051)	-	1098658..1100256 (-)	1599	WP_026337482.1	sensor histidine kinase	-
TERTU_RS04655 (TERTU_1053)	-	1100585..1102213 (+)	1629	WP_015819697.1	NAD+ synthase	-
TERTU_RS04660 (TERTU_1052)	-	1102210..1103115 (-)	906	WP_015819921.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50525.77 Da
• Isoelectric Point: 4.9989

>NTDB_id=34905 TERTU_RS04645 WP_015820830.1 1097270..1098655(-) (pilR) [Teredinibacter turnerae T7901]
MASVHALIIDDEPDIRELLEITLARMGVDVVSAANIAEAKQALTKGGFNICLTDMKLPDGNGIDLVRYIQKYDAELPVAV
ITAHGNMDTAIEAMKAGAFDFVSKPINLSALRKLIDTAITSNQLAAVPNVESESTNKIIGASETIISLKKSIKKLARSQA
PVYISGESGSGKELVARSVHELGPRSTSPFVAVNCGAIPSELMESEFFGHKKGAFTGASQEKQGLFQAADGGTLFLDEVA
DLPLEMQVKLLRAIQEKAIRPIGGQTEISTNVRILSATHKNLEELVNNGNFRQDLFYRLNVIQLKVPALRERKSDIPLLV
ESLLSRIAEACEMAPPSLGPKALQMLMDYDYPGNIRELENILERAFTLCEEDVINDTDLQINQNSAVIGESSVDRVSKFS
HYTASKNHDSIDDYLAEVEKEILCETLEHTRWNKTLAAKKLGISFRSLRYRLAKLGLDDSD

Nucleotide

• Length: 1386 bp

>NTDB_id=34905 TERTU_RS04645 WP_015820830.1 1097270..1098655(-) (pilR) [Teredinibacter turnerae T7901]
ATGGCCAGCGTTCACGCACTCATAATCGACGACGAACCCGACATCCGCGAACTGCTCGAAATTACTCTCGCTCGCATGGG
GGTCGATGTGGTAAGCGCAGCTAATATTGCTGAAGCAAAACAAGCCCTGACCAAGGGCGGATTCAATATTTGCTTGACGG
ACATGAAGCTGCCTGATGGGAACGGAATTGATCTGGTTAGATACATTCAGAAATATGATGCAGAGTTACCGGTCGCCGTA
ATTACCGCACACGGGAATATGGACACGGCGATTGAAGCCATGAAAGCAGGCGCGTTTGATTTTGTTAGTAAGCCCATCAA
CCTGAGCGCGTTGCGAAAGCTGATTGATACCGCCATTACGTCGAACCAATTAGCGGCAGTGCCAAACGTCGAAAGTGAAA
GTACCAACAAAATTATTGGCGCTTCCGAAACGATCATCTCACTAAAAAAATCCATTAAAAAATTAGCCCGCTCACAAGCG
CCGGTTTATATTAGTGGCGAATCGGGCAGCGGGAAGGAATTGGTCGCACGTTCAGTTCATGAGCTGGGGCCTCGCTCGAC
TAGTCCATTTGTGGCAGTAAATTGCGGCGCAATTCCCAGTGAACTCATGGAGAGCGAATTTTTCGGCCACAAAAAAGGAG
CTTTTACCGGCGCATCCCAGGAAAAACAAGGCTTGTTTCAGGCCGCAGATGGCGGCACCCTTTTTCTGGATGAAGTCGCT
GACTTACCTCTGGAAATGCAAGTCAAATTACTTCGTGCTATTCAGGAAAAAGCCATTCGCCCAATTGGCGGCCAAACAGA
AATTTCTACGAATGTAAGAATCCTGTCAGCGACTCATAAAAACCTTGAGGAACTGGTTAACAATGGCAATTTCCGTCAGG
ATCTGTTTTATCGGCTCAATGTTATTCAATTAAAAGTGCCAGCGTTGCGTGAACGCAAATCGGACATCCCATTGCTCGTG
GAATCGCTTCTCTCCCGCATTGCTGAAGCCTGCGAAATGGCGCCCCCAAGCCTCGGCCCCAAAGCACTCCAGATGTTGAT
GGATTACGACTACCCAGGCAACATTCGCGAACTGGAAAACATTCTCGAACGCGCTTTCACGCTTTGCGAAGAAGACGTAA
TAAATGACACCGATCTGCAAATCAACCAAAACTCTGCCGTTATTGGTGAAAGCAGTGTGGACAGAGTGTCAAAATTCAGT
CACTATACTGCAAGCAAAAACCACGATTCTATCGACGATTATCTTGCTGAAGTGGAAAAGGAAATCCTCTGCGAGACGCT
CGAACACACCCGCTGGAATAAGACACTGGCGGCAAAAAAACTGGGTATCAGTTTTCGTTCATTGCGTTATCGTTTAGCGA
AACTGGGTTTGGACGACTCTGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (415-455)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: C5BQY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.484	100	0.575
pilR	Acinetobacter baumannii strain A118	48.69	99.349	0.484