Detailed information NTG0348838

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EY643_RS19645
• Genome accession: NZ_CP036422
• Coordinates: 855142..856527 (-)
• Length: 461 a.a.
• NCBI ID: WP_205743140.1
• Uniprot ID: -
• Organism: Halioglobus maricola strain IMCC14385
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 850142..861527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EY643_RS03790 (EY643_03780)	-	850594..851013 (+)	420	WP_152660941.1	type IV pilus modification PilV family protein	-
EY643_RS03795 (EY643_03785)	-	851013..851912 (+)	900	WP_152660942.1	PilW family protein	-
EY643_RS03800 (EY643_03790)	-	851896..852387 (+)	492	WP_170287271.1	hypothetical protein	-
EY643_RS03805 (EY643_03795)	-	852387..854687 (+)	2301	WP_152660944.1	pilus assembly protein	-
EY643_RS03810 (EY643_03800)	-	854684..855121 (+)	438	WP_153240896.1	type IV pilin protein	-
EY643_RS19645	pilR	855142..856527 (-)	1386	WP_205743140.1	sigma-54-dependent transcriptional regulator	Regulator
EY643_RS19650	-	856528..858147 (-)	1620	WP_240732814.1	sensor histidine kinase	-
EY643_RS03820 (EY643_03810)	-	858283..859914 (+)	1632	WP_152660945.1	NAD+ synthase	-
EY643_RS03825 (EY643_03815)	-	859911..860777 (-)	867	WP_240732883.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50143.51 Da
• Isoelectric Point: 4.6428

>NTDB_id=348838 EY643_RS19645 WP_205743140.1 855142..856527(-) (pilR) [Halioglobus maricola strain IMCC14385]
MAAQSVLIVDDEPDIRELLDITLSRMGLETYSAATLGEARARFKEIEPDLCLTDMKLPDGNGISLVEYIQQDFPQVPVAM
ITAHGSVETAISALKAGAFDFISKPIELDTLRKLVHSALQLPGDTTDVDTAVDHDLIGSAPAVETLRQQIIKLARSQAPV
HIRGESGSGKEVVARLIHNNGPRAAGNFVAVNCGAIPPDLMESELFGHIKGSFTGANADKPGLFQAAAGGTLFLDEVADL
PLGMQVKLLRAIQEKSVRPVGASAEQATDVRLLSATHKDLAAEVEAGRFRNDLYYRINVIDVQVPSLRERREDLPALAEN
ILSRISNEEGSTRATLDASALDALSGYDFPGNVRELENVLERAFALSDGSQITDEDLQFPSNSPSPRNPTTRTRKTDAPG
SEVWNLRDADGDLEGFLEDIERKVLTSTLEQNRWNRTAAAKQLGISFRSLRYRLKKLGLDD

Nucleotide

• Length: 1386 bp

>NTDB_id=348838 EY643_RS19645 WP_205743140.1 855142..856527(-) (pilR) [Halioglobus maricola strain IMCC14385]
ATGGCAGCGCAAAGCGTTCTTATCGTCGACGACGAGCCGGATATCCGGGAGTTGCTCGACATTACCCTCAGCAGGATGGG
GTTGGAAACCTACAGTGCAGCCACGCTGGGGGAGGCCCGGGCACGCTTCAAGGAAATCGAACCCGACCTCTGCCTCACTG
ACATGAAGCTGCCCGATGGTAACGGCATCAGCCTGGTGGAATATATCCAGCAAGATTTTCCCCAGGTACCGGTGGCGATG
ATCACGGCACATGGCAGCGTAGAAACGGCTATCTCAGCCCTCAAGGCCGGGGCCTTCGATTTCATTTCAAAACCTATCGA
ACTCGACACCCTGCGCAAGCTGGTACACAGCGCATTACAACTACCGGGCGACACCACCGACGTCGACACCGCGGTAGATC
ACGACTTGATTGGCTCTGCCCCTGCGGTAGAGACTCTCCGCCAACAGATCATCAAGCTGGCCCGCAGCCAGGCCCCAGTG
CATATTCGCGGTGAGTCTGGCAGTGGTAAGGAAGTGGTCGCACGCCTGATCCACAACAATGGCCCCCGCGCTGCGGGCAA
CTTTGTCGCCGTCAACTGCGGTGCCATCCCGCCGGACCTGATGGAGAGCGAGCTATTCGGTCATATCAAAGGTAGTTTCA
CTGGCGCCAACGCTGACAAGCCCGGCCTGTTCCAGGCCGCAGCCGGGGGGACGCTGTTCCTCGATGAGGTGGCTGACCTG
CCGCTGGGCATGCAGGTAAAACTTTTGCGCGCCATCCAGGAGAAATCCGTACGCCCGGTCGGTGCCAGCGCGGAGCAAGC
CACGGATGTCCGCCTACTCAGCGCCACCCATAAAGATCTGGCGGCCGAAGTGGAAGCCGGTCGTTTTCGCAACGATCTCT
ACTACCGCATCAATGTGATCGATGTGCAGGTACCTAGCCTGCGTGAACGCAGAGAGGACCTACCTGCGCTGGCTGAAAAC
ATCCTCAGCCGCATTTCCAATGAGGAGGGTTCCACCAGGGCCACGCTCGATGCAAGTGCGCTGGACGCGCTGTCTGGCTA
TGATTTCCCGGGTAACGTGCGCGAGCTGGAAAATGTGCTGGAGCGCGCGTTCGCTCTCTCCGACGGCTCGCAGATCACTG
ATGAAGACCTGCAGTTCCCAAGTAATTCCCCATCACCACGTAACCCCACCACACGTACCCGGAAAACAGATGCTCCTGGC
AGCGAAGTGTGGAACCTGCGTGACGCCGACGGCGATCTGGAAGGATTCCTCGAAGACATTGAGCGCAAGGTGCTCACCTC
GACCCTGGAGCAAAACCGCTGGAACAGGACCGCAGCGGCGAAGCAACTAGGCATTAGCTTCCGCTCTTTACGCTATCGCT
TGAAAAAACTTGGCCTCGACGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Bacterial regulatory protein, Fis family (HTH_8) (416-457)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.555	100	0.618
pilR	Acinetobacter baumannii strain A118	48.077	100	0.488