Detailed information NTG0348784

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EYF70_RS23590
• Genome accession: NZ_CP036401
• Coordinates: 5700926..5701801 (+)
• Length: 291 a.a.
• NCBI ID: WP_131147570.1
• Uniprot ID: A0A411X3N1
• Organism: Pseudoduganella albidiflava strain DSM 17472
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5695926..5706801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYF70_RS23580 (EYF70_23580)	-	5697105..5699378 (-)	2274	WP_131147568.1	TonB-dependent siderophore receptor	-
EYF70_RS23585 (EYF70_23585)	-	5699645..5700715 (-)	1071	WP_131147569.1	LacI family DNA-binding transcriptional regulator	-
EYF70_RS23590 (EYF70_23590)	pilD	5700926..5701801 (+)	876	WP_131147570.1	A24 family peptidase	Machinery gene
EYF70_RS23595 (EYF70_23595)	coaE	5701798..5702457 (+)	660	WP_131147571.1	dephospho-CoA kinase	-
EYF70_RS23600 (EYF70_23600)	zapD	5702531..5703286 (+)	756	WP_131147572.1	cell division protein ZapD	-
EYF70_RS23605 (EYF70_23605)	yacG	5703299..5703478 (+)	180	WP_131147573.1	DNA gyrase inhibitor YacG	-
EYF70_RS23610 (EYF70_23610)	-	5703652..5704050 (-)	399	WP_131147574.1	NUDIX domain-containing protein	-
EYF70_RS23615 (EYF70_23615)	-	5704047..5704934 (-)	888	WP_371861665.1	ATP-binding protein	-
EYF70_RS23620 (EYF70_23620)	argJ	5704991..5706226 (-)	1236	WP_131147576.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31168.04 Da
• Isoelectric Point: 8.3248

>NTDB_id=348784 EYF70_RS23590 WP_131147570.1 5700926..5701801(+) (pilD) [Pseudoduganella albidiflava strain DSM 17472]
MLEQLFLFSPPATLPAAVIAAIFGLLVGSFLNVVIYRIPKMMQRESDNYVASESGLPLPHTDRFNLMVPRSACPHCGHRI
TALENIPVISWLALRGKCSQCKAPISARYPAIEALTGVLSAALVWQFGSGWTGLATLLFAYLLIAMTFIDADTRLLPDDL
TYPLLWAGLLVNLNGTFVPLGDAVIGAAAGYLCLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWMMLPTIILLSSVV
GAVVGIGLMVFAKRGRDNPIPFGPYLAAAGMIALLFGTQIGAATSRFLGVA

Nucleotide

• Length: 876 bp

>NTDB_id=348784 EYF70_RS23590 WP_131147570.1 5700926..5701801(+) (pilD) [Pseudoduganella albidiflava strain DSM 17472]
ATGCTCGAGCAACTCTTCCTCTTTTCGCCGCCCGCCACGCTCCCCGCCGCGGTCATCGCCGCCATCTTCGGCCTGCTGGT
CGGCAGCTTCCTCAATGTCGTCATCTACCGGATACCGAAGATGATGCAGCGCGAATCGGACAACTACGTGGCCAGCGAAT
CGGGCTTGCCGCTGCCGCATACGGACCGCTTCAACCTGATGGTGCCGCGTTCGGCCTGTCCTCATTGCGGTCACCGGATC
ACGGCACTGGAAAACATTCCCGTCATCAGCTGGCTGGCGCTGCGCGGCAAGTGCAGCCAGTGCAAGGCGCCGATCTCGGC
GCGCTATCCCGCCATCGAGGCGCTGACGGGCGTGCTGTCGGCCGCGCTGGTCTGGCAGTTCGGCAGCGGCTGGACGGGCC
TGGCCACGCTGCTGTTCGCCTACCTGCTGATCGCCATGACGTTCATCGATGCCGATACCCGGCTGTTGCCGGACGACCTG
ACCTACCCGCTGCTGTGGGCCGGCCTGCTGGTGAACCTGAACGGCACTTTCGTGCCGCTGGGCGATGCCGTGATCGGCGC
CGCCGCCGGCTACCTGTGCCTGTGGTCCGTCTACTGGGCGTTCAAGCTGCTGACCGGGAAGGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTCGCCGCGCTGGGCGCCTGGCTGGGCTGGATGATGCTGCCGACGATCATCCTGCTGTCGTCCGTCGTG
GGCGCGGTGGTCGGCATCGGCCTGATGGTGTTCGCCAAGCGCGGCCGCGACAATCCGATTCCGTTCGGGCCCTACCTGGC
CGCCGCCGGCATGATCGCGCTGCTGTTCGGCACGCAGATCGGCGCCGCCACCAGCCGGTTCCTGGGCGTGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

3D structure

• AlphaFold DB: A0A411X3N1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.719	96.564	0.567
pilD	Vibrio campbellii strain DS40M4	57.836	92.096	0.533
pilD	Neisseria gonorrhoeae MS11	50.545	94.502	0.478
pilD	Acinetobacter baumannii D1279779	51.311	91.753	0.471
pilD	Acinetobacter nosocomialis M2	50.187	91.753	0.46