Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EYC12_RS05370 Genome accession   NZ_CP036396
Coordinates   1125895..1126299 (-) Length   134 a.a.
NCBI ID   WP_000599206.1    Uniprot ID   -
Organism   Helicobacter pylori strain 12C8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120895..1131299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC12_RS05330 - 1120983..1122074 (-) 1092 WP_000426610.1 hypothetical protein -
  EYC12_RS05335 - 1122064..1122849 (-) 786 WP_000488071.1 hypothetical protein -
  EYC12_RS05340 - 1122849..1123235 (-) 387 WP_000397472.1 DUF1294 domain-containing protein -
  EYC12_RS07570 - 1123238..1123435 (+) 198 WP_001116510.1 hypothetical protein -
  EYC12_RS05345 - 1123574..1123840 (-) 267 WP_001987464.1 hypothetical protein -
  EYC12_RS05350 - 1123924..1124262 (-) 339 WP_033587433.1 glycoside hydrolase family protein -
  EYC12_RS05355 - 1124273..1124833 (-) 561 WP_000037133.1 hypothetical protein -
  EYC12_RS05360 - 1124817..1125155 (-) 339 WP_000699920.1 hypothetical protein -
  EYC12_RS05365 - 1125286..1125837 (-) 552 WP_000892207.1 tetratricopeptide repeat protein -
  EYC12_RS05370 dprB 1125895..1126299 (-) 405 WP_000599206.1 Holliday junction resolvase RuvX Machinery gene
  EYC12_RS05375 dprA 1126296..1127096 (-) 801 WP_000841124.1 DNA-processing protein DprA Machinery gene
  EYC12_RS05380 minE 1127103..1127336 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EYC12_RS05385 minD 1127333..1128139 (-) 807 WP_001019032.1 septum site-determining protein MinD -
  EYC12_RS05390 ilvC 1128163..1129155 (-) 993 WP_001207741.1 ketol-acid reductoisomerase -
  EYC12_RS05400 - 1129404..1130186 (+) 783 WP_001168309.1 NAD+ synthase -
  EYC12_RS05405 - 1130183..1131121 (+) 939 WP_000833970.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15194.74 Da        Isoelectric Point: 8.8777

>NTDB_id=348702 EYC12_RS05370 WP_000599206.1 1125895..1126299(-) (dprB) [Helicobacter pylori strain 12C8]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=348702 EYC12_RS05370 WP_000599206.1 1125895..1126299(-) (dprB) [Helicobacter pylori strain 12C8]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAACGCACGCATTGAGCATTTCATTAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGGGCATTTGGGCAAGAAAAATAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment