Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EYC12_RS00270 | Genome accession | NZ_CP036396 |
| Coordinates | 61952..62527 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203646.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 12C8 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56952..67527
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EYC12_RS00245 | uvrD | 57643..59688 (+) | 2046 | WP_000345169.1 | DNA helicase UvrD | - |
| EYC12_RS00250 | flgA | 59685..60341 (+) | 657 | WP_000697681.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EYC12_RS00255 | - | 60351..60914 (+) | 564 | WP_000780097.1 | UbiX family flavin prenyltransferase | - |
| EYC12_RS00260 | coaD | 60914..61387 (+) | 474 | WP_001169260.1 | pantetheine-phosphate adenylyltransferase | - |
| EYC12_RS00265 | tmk | 61389..61964 (+) | 576 | WP_000289746.1 | dTMP kinase | - |
| EYC12_RS00270 | comFC | 61952..62527 (+) | 576 | WP_001203646.1 | ComF family protein | Machinery gene |
| EYC12_RS00275 | - | 62560..64599 (+) | 2040 | WP_001147690.1 | class I SAM-dependent DNA methyltransferase | - |
| EYC12_RS07675 | - | 64596..65237 (+) | 642 | WP_188348689.1 | restriction endonuclease subunit S | - |
| EYC12_RS07680 | - | 65276..65827 (+) | 552 | WP_317474869.1 | N-6 DNA methylase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21280.86 Da Isoelectric Point: 9.0901
>NTDB_id=348692 EYC12_RS00270 WP_001203646.1 61952..62527(+) (comFC) [Helicobacter pylori strain 12C8]
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAANAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=348692 EYC12_RS00270 WP_001203646.1 61952..62527(+) (comFC) [Helicobacter pylori strain 12C8]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGGCTAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGGCTAACGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |