Detailed information NTG0348457

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EYC24_RS04685
• Genome accession: NZ_CP036384
• Coordinates: 978331..979467 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045899.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 103C8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 973331..984467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYC24_RS04660	hypE	973525..974523 (+)	999	WP_000378813.1	hydrogenase expression/formation protein HypE	-
EYC24_RS04665	-	974597..974734 (+)	138	WP_167549018.1	hypothetical protein	-
EYC24_RS04670	-	974769..975701 (-)	933	WP_001002436.1	GDP-L-fucose synthase	-
EYC24_RS04675	gmd	975694..976839 (-)	1146	WP_000659886.1	GDP-mannose 4,6-dehydratase	-
EYC24_RS04680	-	976863..978266 (-)	1404	WP_000694860.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EYC24_RS04685	comB10	978331..979467 (-)	1137	WP_001045899.1	DNA type IV secretion system protein ComB10	Machinery gene
EYC24_RS04690	comB9	979460..980422 (-)	963	WP_001987609.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EYC24_RS04695	comB8	980422..981165 (-)	744	WP_000660543.1	virB8 family protein	Machinery gene
EYC24_RS04700	comB7	981162..981287 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
EYC24_RS04705	comB6	981303..982358 (-)	1056	WP_000786643.1	P-type conjugative transfer protein TrbL	Machinery gene
EYC24_RS04710	-	982364..983359 (-)	996	WP_000468812.1	PDZ domain-containing protein	-
EYC24_RS04715	-	983359..983652 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
EYC24_RS04720	panD	983663..984013 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42129.77 Da
• Isoelectric Point: 9.9227

>NTDB_id=348457 EYC24_RS04685 WP_001045899.1 978331..979467(-) (comB10) [Helicobacter pylori strain 103C8]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNLQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=348457 EYC24_RS04685 WP_001045899.1 978331..979467(-) (comB10) [Helicobacter pylori strain 103C8]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCTACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTAGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCCATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96