Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HELPY_RS01675 Genome accession   NC_012973
Coordinates   334854..335258 (+) Length   134 a.a.
NCBI ID   WP_000599248.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 329854..340258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS01640 (HELPY_0332) - 330029..330967 (-) 939 WP_000833961.1 tetraacyldisaccharide 4'-kinase -
  HELPY_RS01645 (HELPY_0333) - 330964..331746 (-) 783 WP_001168296.1 NAD+ synthase -
  HELPY_RS01655 (HELPY_0334) ilvC 331998..332990 (+) 993 WP_001207790.1 ketol-acid reductoisomerase -
  HELPY_RS01660 (HELPY_0335) minD 333014..333820 (+) 807 WP_001019028.1 septum site-determining protein MinD -
  HELPY_RS01665 (HELPY_0336) minE 333817..334050 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  HELPY_RS01670 (HELPY_0337) dprA 334057..334857 (+) 801 WP_000835250.1 DNA-processing protein DprA Machinery gene
  HELPY_RS01675 (HELPY_0338) dprB 334854..335258 (+) 405 WP_000599248.1 Holliday junction resolvase RuvX Machinery gene
  HELPY_RS01680 (HELPY_0339) - 335482..336045 (+) 564 WP_041200496.1 tetratricopeptide repeat protein -
  HELPY_RS01685 (HELPY_0340) - 336231..336569 (+) 339 WP_000699922.1 hypothetical protein -
  HELPY_RS01690 (HELPY_0341) - 336553..337113 (+) 561 WP_001035899.1 hypothetical protein -
  HELPY_RS08755 - 337170..337534 (+) 365 Protein_317 glycoside hydrolase family protein -
  HELPY_RS01700 (HELPY_0344) - 337531..337797 (+) 267 WP_000698055.1 hypothetical protein -
  HELPY_RS01710 (HELPY_0345) - 338106..338492 (+) 387 WP_000393584.1 DUF1294 domain-containing protein -
  HELPY_RS01715 (HELPY_0346) - 338492..339277 (+) 786 WP_000119823.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15208.74 Da        Isoelectric Point: 9.5494

>NTDB_id=34842 HELPY_RS01675 WP_000599248.1 334854..335258(+) (dprB) [Helicobacter pylori B38]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILERYCQKVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=34842 HELPY_RS01675 WP_000599248.1 334854..335258(+) (dprB) [Helicobacter pylori B38]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATTGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAATGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCTAGCATAGAAGCTTATGACAATTTAGAGCATTTGGGTAGGAAAAATAAGAGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAAAAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment