Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EYC28_RS04680 Genome accession   NZ_CP036380
Coordinates   976937..977680 (-) Length   247 a.a.
NCBI ID   WP_000660543.1    Uniprot ID   -
Organism   Helicobacter pylori strain 125C7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971937..982680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC28_RS04660 gmd 972209..973354 (-) 1146 WP_000659886.1 GDP-mannose 4,6-dehydratase -
  EYC28_RS04665 - 973378..974781 (-) 1404 WP_000694860.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EYC28_RS04670 comB10 974846..975982 (-) 1137 WP_001045899.1 DNA type IV secretion system protein ComB10 Machinery gene
  EYC28_RS04675 comB9 975975..976937 (-) 963 WP_001987609.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EYC28_RS04680 comB8 976937..977680 (-) 744 WP_000660543.1 virB8 family protein Machinery gene
  EYC28_RS04685 comB7 977677..977802 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  EYC28_RS04690 comB6 977818..978873 (-) 1056 WP_000786643.1 P-type conjugative transfer protein TrbL Machinery gene
  EYC28_RS04695 - 978879..979874 (-) 996 WP_000468812.1 PDZ domain-containing protein -
  EYC28_RS04700 - 979874..980167 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  EYC28_RS04705 panD 980178..980528 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28666.89 Da        Isoelectric Point: 8.3165

>NTDB_id=348379 EYC28_RS04680 WP_000660543.1 976937..977680(-) (comB8) [Helicobacter pylori strain 125C7]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINHIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=348379 EYC28_RS04680 WP_000660543.1 976937..977680(-) (comB8) [Helicobacter pylori strain 125C7]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCGATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGAGCGTATGTGTTAAACCGGGAGAGTATTAACCACATTGACGATAAATCGCGCT
ATGAATTGGTGCGCCTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCTATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment