Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GIJ09_RS06065 Genome accession   NZ_CP045832
Coordinates   1097934..1099178 (-) Length   414 a.a.
NCBI ID   WP_003688869.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092934..1104178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS06030 (GIJ09_06030) - 1093137..1094525 (+) 1389 WP_003688859.1 DEAD/DEAH box helicase -
  GIJ09_RS06040 (GIJ09_06040) - 1094876..1095076 (-) 201 WP_003688861.1 hypothetical protein -
  GIJ09_RS06045 (GIJ09_06045) - 1095090..1095644 (-) 555 WP_003688863.1 hypothetical protein -
  GIJ09_RS06050 (GIJ09_06050) - 1095729..1096229 (-) 501 WP_010357954.1 hypothetical protein -
  GIJ09_RS06055 (GIJ09_06055) - 1096326..1096535 (+) 210 WP_082286575.1 hypothetical protein -
  GIJ09_RS06060 (GIJ09_06060) - 1096634..1097827 (+) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  GIJ09_RS06065 (GIJ09_06065) clpX 1097934..1099178 (-) 1245 WP_003688869.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GIJ09_RS06070 (GIJ09_06070) rbfA 1099361..1099732 (+) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  GIJ09_RS06075 (GIJ09_06075) - 1099743..1100267 (+) 525 WP_003688872.1 hypothetical protein -
  GIJ09_RS06080 (GIJ09_06080) truB 1100325..1101245 (+) 921 WP_010357946.1 tRNA pseudouridine(55) synthase TruB -
  GIJ09_RS06085 (GIJ09_06085) - 1101463..1103625 (+) 2163 WP_050169315.1 DNA methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44833.21 Da        Isoelectric Point: 4.8622

>NTDB_id=348219 GIJ09_RS06065 WP_003688869.1 1097934..1099178(-) (clpX) [Neisseria gonorrhoeae strain AUSMDU00010541]
MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=348219 GIJ09_RS06065 WP_003688869.1 1097934..1099178(-) (clpX) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGTCAAACATTTGATTGAGGGCGAAAACGC
CTTTATCTGCGACGAATGCGTCTCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.28

100

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.448

99.758

0.553