Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   GIJ09_RS05365 Genome accession   NZ_CP045832
Coordinates   964823..966568 (-) Length   581 a.a.
NCBI ID   WP_003691195.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959823..971568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS05345 (GIJ09_05345) lon 959833..962295 (-) 2463 WP_003691187.1 endopeptidase La -
  GIJ09_RS05350 (GIJ09_05350) - 962547..963006 (+) 460 Protein_983 methyltransferase -
  GIJ09_RS05355 (GIJ09_05355) - 963135..964097 (-) 963 WP_017147020.1 IS110 family transposase -
  GIJ09_RS05360 (GIJ09_05360) - 964105..964751 (+) 647 Protein_985 methyltransferase -
  GIJ09_RS05365 (GIJ09_05365) recD 964823..966568 (-) 1746 WP_003691195.1 exodeoxyribonuclease V subunit alpha Machinery gene
  GIJ09_RS05370 (GIJ09_05370) lolD 966635..967330 (-) 696 WP_003688655.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GIJ09_RS05375 (GIJ09_05375) - 967323..968570 (-) 1248 WP_003691197.1 lipoprotein-releasing ABC transporter permease subunit -
  GIJ09_RS05385 (GIJ09_05385) - 968796..969074 (+) 279 WP_003688659.1 hypothetical protein -
  GIJ09_RS05390 (GIJ09_05390) recR 969130..969747 (-) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  GIJ09_RS05395 (GIJ09_05395) - 969814..971352 (-) 1539 WP_003695299.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63097.87 Da        Isoelectric Point: 5.8825

>NTDB_id=348212 GIJ09_RS05365 WP_003691195.1 964823..966568(-) (recD) [Neisseria gonorrhoeae strain AUSMDU00010541]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=348212 GIJ09_RS05365 WP_003691195.1 964823..966568(-) (recD) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCTATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

99.828

100

0.998
  recD Neisseria gonorrhoeae strain FA1090

99.656

100

0.997