Detailed information NTG0348169

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: EYB51_RS18580
• Genome accession: NZ_CP036356
• Coordinates: 3325924..3328524 (+)
• Length: 866 a.a.
• NCBI ID: WP_087965510.1
• Uniprot ID: -
• Organism: Bacillus sp. SYJ
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3320924..3333524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYB51_RS18545	prsA	3321686..3322543 (-)	858	WP_087965516.1	peptidylprolyl isomerase PrsA	-
EYB51_RS18550	-	3322673..3322804 (-)	132	WP_001120845.1	DUF3941 domain-containing protein	-
EYB51_RS18555	-	3322905..3323762 (+)	858	WP_087965514.1	YitT family protein	-
EYB51_RS18560	-	3323788..3323985 (-)	198	WP_087965512.1	DUF3813 domain-containing protein	-
EYB51_RS18565	-	3323986..3324126 (-)	141	WP_000516816.1	hypothetical protein	-
EYB51_RS18570	-	3324232..3325041 (-)	810	WP_001041235.1	Cof-type HAD-IIB family hydrolase	-
EYB51_RS18575	-	3325533..3325712 (+)	180	WP_000531421.1	YjzC family protein	-
EYB51_RS18580	clpC	3325924..3328524 (+)	2601	WP_087965510.1	ATP-dependent chaperone ClpB	Regulator
EYB51_RS18585	-	3328562..3328744 (-)	183	WP_001211116.1	YjzD family protein	-
EYB51_RS18590	-	3328901..3329635 (+)	735	WP_000028705.1	hypothetical protein	-
EYB51_RS18595	-	3329665..3330537 (+)	873	WP_131101622.1	NAD(P)-dependent oxidoreductase	-
EYB51_RS18600	comZ	3330591..3330767 (+)	177	WP_087965781.1	ComZ family protein	Regulator
EYB51_RS18605	fabH	3331162..3332094 (+)	933	WP_087965508.1	beta-ketoacyl-ACP synthase III	-
EYB51_RS18610	fabF	3332125..3333363 (+)	1239	WP_000412652.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97600.56 Da
• Isoelectric Point: 5.0876

>NTDB_id=348169 EYB51_RS18580 WP_087965510.1 3325924..3328524(+) (clpC) [Bacillus sp. SYJ]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAENLIKKKPSVTGSGAE
AGKLYITGALQQLLVRAEKEAEKLQDDYISVEHVLLAFTEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNRAAELRHGKIPAIEKELKEAEEMGANNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=348169 EYB51_RS18580 WP_087965510.1 3325924..3328524(+) (clpC) [Bacillus sp. SYJ]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAACAAGGTGCCGAAAATTTAATTAAGAAAAAGCCTTCCGTAACGGGAAGCGGTGCAGAA
GCAGGTAAATTATATATAACAGGTGCTTTGCAACAACTACTTGTAAGAGCAGAAAAAGAAGCAGAGAAATTGCAAGATGA
TTACATTTCAGTTGAACATGTATTACTTGCTTTTACTGAAGAAAAAGGCGATATAAACCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTACTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGTCGTGATTTAGTGGCGGAAGTAAGAGCGGGGAAAATTGACCCTGTTATCGGACGCGA
TAGTGAAATTCGCCGCGTAATCCGTATTCTTTCACGTAAAACGAAAAACAACCCGGTTTTAATTGGGGAACCGGGTGTAG
GTAAAACAGCAATCGTTGAAGGGTTAGCACAGCGTATTGTGAAAAAAGACGTACCAGAGGGATTAAAAGATAGAACAATT
TTTGCGTTAGATATGAGTGCGCTTGTAGCCGGTGCGAAATTCCGCGGTGAGTTTGAGGAGCGTCTCCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGTCGTATTTTACTATTCATTGATGAACTTCACACAATCGTCGGCGCTGGTAAAACAGAAG
GTGCGATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACAACACTAGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCTATTTTACGTGGTTTAAAAGAGCGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCAGTTTTATCAGATCGATATATTTCGGATCGTTTCTTACCGGATAAAGCAATTGATCTTGTTGACGAAGCG
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCAGCTCTTGGAAAAGAGAAAGACTTTGGTAGCCAAGAACGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTGGCAAGTGGTATGAGAGCCAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGTAATTACGACTTAAATAGAGCAGCGGAACTTCGCCACGG
AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGTGCGAATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCTGATATTGTTTCACGCTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGTGAGAAATTATTACGCTTAGAGCAAATTTTATCAGAGCGTGTTATCGGACAAGAAGAAGCGGTAAGCCTAGTATC
AGACGCAGTTCTTCGTGCTCGTGCTGGTATTAAAGACCCGAACCGTCCAATTGGTTCCTTCATTTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCGAAAACGCTAGCGCAGTCTTTATTTGATAGTGAAGAGCAAATGATTCGTATTGATATG
TCTGAGTACATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTTGGATATGAAGAGGGTGGTCA
ATTAACAGAAGCAGTAAGACGTAAACCGTATTCCGTTATTTTGTTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTGGATGACGGACGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACAGTTATT
ATTATGACGTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGAAGATGGCTCCATTAAAGAGGAATCAAGAGA
ACTTGTCATGGGGCAATTAAGAGGACATTTCCGACCAGAGTTTTTAAATCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGCCGTTTAGCTGACCGTCATATTACG
GTAGAATTAACAGACGCAGCGAAAGAGTTTGTTGTCGAAGCTGGCTTTGATCCAATGTACGGAGCTCGTCCGTTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAACGATCACTGACAATAGTCATGTAGTGG
TTGATGTAGAAAATAACGAATTAGTTGTGCATGTGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.657	100	0.482
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389