Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EYB51_RS05875 Genome accession   NZ_CP036356
Coordinates   911957..913696 (-) Length   579 a.a.
NCBI ID   WP_071726704.1    Uniprot ID   -
Organism   Bacillus sp. SYJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 906957..918696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS05840 - 907746..907910 (-) 165 Protein_935 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  EYB51_RS05845 - 907932..908546 (-) 615 WP_087966035.1 hypothetical protein -
  EYB51_RS05850 - 908530..908733 (-) 204 WP_240687577.1 hypothetical protein -
  EYB51_RS05855 - 908735..908878 (-) 144 WP_240687578.1 hypothetical protein -
  EYB51_RS05860 spo0A 909458..910252 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  EYB51_RS05870 spoIVB 910540..911838 (-) 1299 WP_071726705.1 SpoIVB peptidase -
  EYB51_RS05875 recN 911957..913696 (-) 1740 WP_071726704.1 DNA repair protein RecN Machinery gene
  EYB51_RS05880 argR 913964..914413 (-) 450 WP_001032581.1 arginine repressor ArgR -
  EYB51_RS05885 - 914556..915395 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  EYB51_RS05890 dxs 915399..917291 (-) 1893 WP_071726703.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EYB51_RS05895 ispA 917594..918484 (-) 891 WP_000150359.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65769.87 Da        Isoelectric Point: 4.7933

>NTDB_id=348141 EYB51_RS05875 WP_071726704.1 911957..913696(-) (recN) [Bacillus sp. SYJ]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDLVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=348141 EYB51_RS05875 WP_071726704.1 911957..913696(-) (recN) [Bacillus sp. SYJ]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTGACGGTTTT
AAGTGGTGAAACTGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTCGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAGGCTGAAATAGAGGGGCTATTTTATGTAGAAGATGATAAACATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACTCTTAGCGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGATTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTG
GATATATATCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAGATTTATAAAGCATTAGGTGACGCATATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTACCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCGGAAGAGCCTCTCGTGGAGGGAGCACCAGTAAGACTTACGGCGGATGGTTACGATCTTGTGGA
ATTTTATATTTCAACAAATCCAGGTGAACCGCTAAAACCACTTTCAAAAGTGGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTGTGTATTACGCACTTACC
TCAAGTAGCATCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACGG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603

Multiple sequence alignment