Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | MSIP34_RS09730 | Genome accession | NC_012969 |
| Coordinates | 2043415..2044440 (+) | Length | 341 a.a. |
| NCBI ID | WP_015830528.1 | Uniprot ID | C6X722 |
| Organism | Methylovorus glucosotrophus SIP3-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2038415..2049440
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MSIP34_RS09705 (Msip34_1918) | - | 2039029..2039280 (-) | 252 | WP_015830523.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| MSIP34_RS09710 (Msip34_1919) | coaD | 2039290..2039805 (-) | 516 | WP_015830524.1 | pantetheine-phosphate adenylyltransferase | - |
| MSIP34_RS09715 (Msip34_1920) | rsmD | 2039792..2040385 (-) | 594 | WP_041370117.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| MSIP34_RS09720 (Msip34_1921) | - | 2040375..2041691 (-) | 1317 | WP_015830526.1 | pitrilysin family protein | - |
| MSIP34_RS09725 (Msip34_1922) | - | 2041760..2043109 (-) | 1350 | WP_015830527.1 | pitrilysin family protein | - |
| MSIP34_RS09730 (Msip34_1923) | pilA | 2043415..2044440 (+) | 1026 | WP_015830528.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| MSIP34_RS09735 (Msip34_1924) | ftsE | 2044474..2045127 (+) | 654 | WP_013442714.1 | cell division ATP-binding protein FtsE | - |
| MSIP34_RS09740 (Msip34_1925) | ftsX | 2045124..2046026 (+) | 903 | WP_015830529.1 | permease-like cell division protein FtsX | - |
| MSIP34_RS09745 (Msip34_1926) | ribA | 2046047..2046649 (+) | 603 | WP_013442716.1 | GTP cyclohydrolase II | - |
| MSIP34_RS09750 (Msip34_1927) | - | 2046765..2047541 (-) | 777 | WP_015830530.1 | ferredoxin--NADP reductase | - |
| MSIP34_RS09755 (Msip34_1928) | - | 2047578..2048504 (-) | 927 | WP_015830531.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| MSIP34_RS09760 (Msip34_1929) | - | 2048501..2049250 (-) | 750 | WP_013442719.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
Sequence
Protein
Download Length: 341 a.a. Molecular weight: 36251.51 Da Isoelectric Point: 5.8450
>NTDB_id=34802 MSIP34_RS09730 WP_015830528.1 2043415..2044440(+) (pilA) [Methylovorus glucosotrophus SIP3-4]
MFDFFKKDKTPPPTPDVPASTPAPETPAAPAPTESAAENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELE
TILLTSDVGVAATQALLEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTTSIGK
LANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESGDPAAVIFDAVNSAKARNIDIVLADTAGRLPTQLNL
MEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGV
GESIADLRPFKAEEFVDALFS
MFDFFKKDKTPPPTPDVPASTPAPETPAAPAPTESAAENKLSWTERLKNGLAKTRSQLGNQLASLFGGGKIDEDVYEELE
TILLTSDVGVAATQALLEQIRQRVKRQSLSDTTQLKQALKDALLELLAPLEKPLVTTTHQPFVIMLAGVNGAGKTTSIGK
LANLFQAQGKSVLIAAGDTFRAAAREQLQAWGDRNNVHVVAQESGDPAAVIFDAVNSAKARNIDIVLADTAGRLPTQLNL
MEEIRKVQRVIGKALPGAPHEILLVLDANTGQNAISQVKAFDDALGVTGLVLSKLDGTAKGGVIAAIAQARPIPIRYIGV
GESIADLRPFKAEEFVDALFS
Nucleotide
Download Length: 1026 bp
>NTDB_id=34802 MSIP34_RS09730 WP_015830528.1 2043415..2044440(+) (pilA) [Methylovorus glucosotrophus SIP3-4]
ATGTTCGATTTTTTCAAAAAAGACAAGACACCCCCTCCCACGCCAGATGTGCCAGCCAGCACTCCTGCGCCCGAGACTCC
CGCCGCTCCAGCCCCCACGGAATCTGCCGCTGAAAACAAGCTGAGCTGGACCGAGCGCCTGAAAAACGGCCTGGCAAAAA
CACGCAGCCAGCTGGGCAATCAGCTGGCCAGCCTCTTTGGTGGCGGCAAGATCGATGAAGATGTATACGAAGAGCTGGAA
ACCATCCTGCTCACCTCCGATGTTGGCGTCGCCGCCACGCAAGCGCTGCTGGAGCAGATACGCCAGCGCGTAAAGCGCCA
GAGCCTGAGCGACACCACCCAGCTGAAACAGGCCCTGAAAGATGCCCTGCTAGAGCTGCTGGCCCCGCTGGAAAAACCGC
TGGTCACCACCACCCACCAGCCGTTTGTCATCATGCTGGCCGGCGTCAATGGGGCTGGCAAAACCACCAGCATCGGCAAG
CTGGCCAATCTGTTTCAGGCGCAAGGCAAATCCGTGCTGATCGCCGCTGGCGATACCTTCCGCGCCGCCGCTCGCGAGCA
ATTGCAAGCCTGGGGCGACCGCAACAATGTGCATGTGGTTGCCCAGGAAAGTGGCGATCCGGCTGCCGTGATTTTTGATG
CAGTGAACTCCGCCAAGGCACGCAATATTGATATCGTGCTGGCCGACACCGCCGGCCGCCTGCCAACCCAGCTCAATCTG
ATGGAAGAAATTCGCAAGGTGCAGCGCGTGATCGGCAAGGCATTGCCGGGCGCGCCGCATGAAATCCTGCTGGTGCTGGA
TGCCAATACGGGCCAGAACGCCATCAGCCAGGTCAAGGCGTTTGATGATGCCCTGGGTGTGACCGGCCTGGTACTGAGCA
AACTGGATGGCACGGCCAAGGGCGGTGTGATTGCGGCGATTGCCCAGGCGCGCCCCATCCCCATCCGTTATATCGGCGTG
GGCGAAAGCATCGCCGACCTGCGGCCGTTCAAGGCAGAGGAATTTGTAGATGCGCTGTTTTCGTGA
ATGTTCGATTTTTTCAAAAAAGACAAGACACCCCCTCCCACGCCAGATGTGCCAGCCAGCACTCCTGCGCCCGAGACTCC
CGCCGCTCCAGCCCCCACGGAATCTGCCGCTGAAAACAAGCTGAGCTGGACCGAGCGCCTGAAAAACGGCCTGGCAAAAA
CACGCAGCCAGCTGGGCAATCAGCTGGCCAGCCTCTTTGGTGGCGGCAAGATCGATGAAGATGTATACGAAGAGCTGGAA
ACCATCCTGCTCACCTCCGATGTTGGCGTCGCCGCCACGCAAGCGCTGCTGGAGCAGATACGCCAGCGCGTAAAGCGCCA
GAGCCTGAGCGACACCACCCAGCTGAAACAGGCCCTGAAAGATGCCCTGCTAGAGCTGCTGGCCCCGCTGGAAAAACCGC
TGGTCACCACCACCCACCAGCCGTTTGTCATCATGCTGGCCGGCGTCAATGGGGCTGGCAAAACCACCAGCATCGGCAAG
CTGGCCAATCTGTTTCAGGCGCAAGGCAAATCCGTGCTGATCGCCGCTGGCGATACCTTCCGCGCCGCCGCTCGCGAGCA
ATTGCAAGCCTGGGGCGACCGCAACAATGTGCATGTGGTTGCCCAGGAAAGTGGCGATCCGGCTGCCGTGATTTTTGATG
CAGTGAACTCCGCCAAGGCACGCAATATTGATATCGTGCTGGCCGACACCGCCGGCCGCCTGCCAACCCAGCTCAATCTG
ATGGAAGAAATTCGCAAGGTGCAGCGCGTGATCGGCAAGGCATTGCCGGGCGCGCCGCATGAAATCCTGCTGGTGCTGGA
TGCCAATACGGGCCAGAACGCCATCAGCCAGGTCAAGGCGTTTGATGATGCCCTGGGTGTGACCGGCCTGGTACTGAGCA
AACTGGATGGCACGGCCAAGGGCGGTGTGATTGCGGCGATTGCCCAGGCGCGCCCCATCCCCATCCGTTATATCGGCGTG
GGCGAAAGCATCGCCGACCTGCGGCCGTTCAAGGCAGAGGAATTTGTAGATGCGCTGTTTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
68.69 |
91.789 |
0.63 |