Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GII77_RS09825 Genome accession   NZ_CP045825
Coordinates   1860308..1860739 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain 75     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855308..1865739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS09805 (GII77_09805) spoVS 1855868..1856128 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GII77_RS09810 (GII77_09810) tdh 1856395..1857438 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  GII77_RS09815 (GII77_09815) kbl 1857451..1858629 (+) 1179 WP_015252071.1 glycine C-acetyltransferase -
  GII77_RS09820 (GII77_09820) miaB 1858777..1860306 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GII77_RS09825 (GII77_09825) ymcA 1860308..1860739 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  GII77_RS09830 (GII77_09830) cotE 1861001..1861546 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  GII77_RS09835 (GII77_09835) hexA 1861679..1864255 (+) 2577 WP_015252070.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=347872 GII77_RS09825 WP_003231834.1 1860308..1860739(+) (ymcA) [Bacillus subtilis strain 75]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=347872 GII77_RS09825 WP_003231834.1 1860308..1860739(+) (ymcA) [Bacillus subtilis strain 75]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1