Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EXZ61_RS16835 Genome accession   NZ_CP036282
Coordinates   3633665..3634063 (-) Length   132 a.a.
NCBI ID   WP_142812855.1    Uniprot ID   -
Organism   Rhodoferax aquaticus strain Gr-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3628665..3639063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXZ61_RS16820 (EXZ61_16830) - 3630472..3632736 (-) 2265 WP_142812852.1 methyl-accepting chemotaxis protein -
  EXZ61_RS16825 (EXZ61_16835) - 3632757..3633287 (-) 531 WP_142812853.1 chemotaxis protein CheW -
  EXZ61_RS16830 (EXZ61_16840) - 3633300..3633665 (-) 366 WP_142812854.1 response regulator -
  EXZ61_RS16835 (EXZ61_16845) pilG 3633665..3634063 (-) 399 WP_142812855.1 response regulator Regulator
  EXZ61_RS16840 (EXZ61_16850) - 3634113..3634286 (-) 174 WP_142812856.1 rubredoxin -
  EXZ61_RS16845 (EXZ61_16855) - 3634407..3635324 (+) 918 WP_142812857.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EXZ61_RS16850 (EXZ61_16860) hemL 3635308..3636612 (+) 1305 WP_142812858.1 glutamate-1-semialdehyde 2,1-aminomutase -
  EXZ61_RS16855 (EXZ61_16865) - 3636609..3637916 (-) 1308 WP_237219194.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14629.97 Da        Isoelectric Point: 7.8211

>NTDB_id=347856 EXZ61_RS16835 WP_142812855.1 3633665..3634063(-) (pilG) [Rhodoferax aquaticus strain Gr-4]
MSTSVSTFKVLVVDDSNTIRRSAEIFLKQGGHEVMLAEDGFVALAQVNDYQPQLIFCDILMPRLDGYQTCAIIKRNPKFS
NVPVIMLSSKDGIFDKARGRMVGAQDYLTKPFTKDQLLQAVQQFGAVLQGAI

Nucleotide


Download         Length: 399 bp        

>NTDB_id=347856 EXZ61_RS16835 WP_142812855.1 3633665..3634063(-) (pilG) [Rhodoferax aquaticus strain Gr-4]
GTGAGTACCAGTGTTTCAACCTTCAAGGTGTTGGTCGTAGATGACAGCAACACGATTCGCCGCAGCGCGGAGATATTCCT
TAAGCAGGGTGGCCATGAAGTGATGTTGGCTGAAGATGGCTTTGTGGCCTTGGCGCAGGTGAATGATTACCAGCCACAGC
TCATTTTTTGCGATATTTTGATGCCGCGCCTTGATGGCTACCAGACCTGTGCGATTATCAAGCGCAACCCCAAGTTTTCG
AACGTTCCCGTGATCATGCTTTCCTCTAAAGATGGAATCTTTGACAAAGCACGCGGACGTATGGTGGGTGCCCAAGATTA
CTTAACCAAACCATTTACCAAGGATCAACTGTTGCAGGCCGTGCAGCAGTTTGGTGCCGTTTTGCAAGGAGCTATTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.098

93.182

0.523
  pilH Synechocystis sp. PCC 6803

42.609

87.121

0.371

Multiple sequence alignment