Detailed information NTG0347626

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EYR27_RS02085
• Genome accession: NZ_CP036251
• Coordinates: 402179..403633 (-)
• Length: 484 a.a.
• NCBI ID: WP_029217419.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae strain X11-5A
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	396005..402125	402179..403633	flank	54

Gene organization within MGE regions

Location: 396005..403633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYR27_RS02045 (EYR27_02045)	-	396005..396988 (+)	984	WP_132709648.1	IS5 family transposase	-
EYR27_RS02050 (EYR27_02050)	-	397059..397868 (+)	810	WP_053507351.1	phytanoyl-CoA dioxygenase family protein	-
EYR27_RS02055 (EYR27_02055)	-	397865..398329 (+)	465	WP_019303374.1	nucleotidyltransferase substrate binding protein	-
EYR27_RS02060 (EYR27_02060)	-	398316..398672 (+)	357	WP_019303375.1	nucleotidyltransferase domain-containing protein	-
EYR27_RS02065 (EYR27_02065)	-	398894..400270 (+)	1377	WP_132709825.1	IS5 family transposase	-
EYR27_RS02070 (EYR27_02070)	-	400343..400660 (+)	318	WP_132709649.1	DUF1153 domain-containing protein	-
EYR27_RS23685	-	400870..401229 (+)	360	Protein_371	DDE-type integrase/transposase/recombinase	-
EYR27_RS23690	-	401337..401483 (+)	147	WP_230079296.1	integrase core domain-containing protein	-
EYR27_RS02080 (EYR27_02080)	-	401514..402125 (+)	612	Protein_373	IS5 family transposase	-
EYR27_RS02085 (EYR27_02085)	pilR	402179..403633 (-)	1455	WP_029217419.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52588.33 Da
• Isoelectric Point: 6.7824

>NTDB_id=347626 EYR27_RS02085 WP_029217419.1 402179..403633(-) (pilR) [Xanthomonas oryzae strain X11-5A]
MRRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLSDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide

• Length: 1455 bp

>NTDB_id=347626 EYR27_RS02085 WP_029217419.1 402179..403633(-) (pilR) [Xanthomonas oryzae strain X11-5A]
TTGCGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGTGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGG
ACGTACGCATCCTGTCGGCCACCCACAAGGACCTGAGCGACCTGGTCTCCGACGGTCGTTTTCGACACGATCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGCATCACGTTTCGGGCGTTGCGTTACAAGTTGAAGAAG
TTGGGCATGGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (28-134)

• Bacterial regulatory protein, Fis family (HTH_8) (441-481)

• Sigma-54 interaction domain (Sigma54_activat) (162-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.499	95.661	0.607
pilR	Acinetobacter baumannii strain A118	48.922	95.868	0.469