Detailed information NTG0347364

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DA718_RS23465
• Genome accession: NZ_CP036175
• Coordinates: 4905582..4906382 (+)
• Length: 266 a.a.
• NCBI ID: WP_112215848.1
• Uniprot ID: -
• Organism: Klebsiella huaxiensis strain WCHKl090001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4900582..4911382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DA718_RS23430 (DA718_23430)	gspH	4900723..4901235 (+)	513	WP_112215805.1	type II secretion system minor pseudopilin GspH	-
DA718_RS23435 (DA718_23435)	gspI	4901232..4901597 (+)	366	WP_112215804.1	type II secretion system minor pseudopilin GspI	-
DA718_RS23440 (DA718_23440)	gspJ	4901594..4902190 (+)	597	WP_112215803.1	type II secretion system minor pseudopilin GspJ	-
DA718_RS23445 (DA718_23445)	gspK	4902187..4903167 (+)	981	WP_112215802.1	type II secretion system minor pseudopilin GspK	-
DA718_RS23450 (DA718_23450)	gspL	4903160..4904356 (+)	1197	WP_112215801.1	type II secretion system protein GspL	-
DA718_RS23455 (DA718_23455)	-	4904349..4904834 (+)	486	WP_112215800.1	type II secretion system protein M	-
DA718_RS23460 (DA718_23460)	-	4904824..4905582 (+)	759	WP_110272505.1	type II secretion system protein N	-
DA718_RS23465 (DA718_23465)	pilD	4905582..4906382 (+)	801	WP_112215848.1	A24 family peptidase	Machinery gene
DA718_RS23470 (DA718_23470)	hrpB	4906684..4909113 (-)	2430	WP_112215799.1	ATP-dependent helicase HrpB	-
DA718_RS23475 (DA718_23475)	thpR	4909186..4909722 (+)	537	WP_112215798.1	RNA 2',3'-cyclic phosphodiesterase	-
DA718_RS23480 (DA718_23480)	sfsA	4909722..4910438 (+)	717	WP_112215797.1	DNA/RNA nuclease SfsA	-
DA718_RS23485 (DA718_23485)	dksA	4910603..4911058 (+)	456	WP_110272509.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29538.19 Da
• Isoelectric Point: 7.6078

>NTDB_id=347364 DA718_RS23465 WP_112215848.1 4905582..4906382(+) (pilD) [Klebsiella huaxiensis strain WCHKl090001]
MIDNITRLEEFAAQFPLVWSGFLLLFGLTFGSFFNVVIHRLPLMMEQTETVNLCFPASFCPQCRQPIAWRDNIPLLSFLW
LKGHSRCCGLPISRRYPLVELATGVLFALAGYLMPPGMPLLGGLLLLSVLLILAAIDAQTLLLPDRLTLPLLWGGLLFNL
NDTFVPLADAVIGAMAGYLSLWTVYWVFRLLTGKEALGYGDFKLLAALGAWSGWQWLPQTLLLASASGLVWTLLQRLVTR
QSLQQPLAFGPWLAFAGGGIFLWNQI

Nucleotide

• Length: 801 bp

>NTDB_id=347364 DA718_RS23465 WP_112215848.1 4905582..4906382(+) (pilD) [Klebsiella huaxiensis strain WCHKl090001]
ATGATAGACAATATCACGCGGCTGGAGGAGTTTGCCGCACAATTCCCGCTCGTCTGGAGCGGTTTTTTACTCCTTTTCGG
TCTGACGTTCGGCAGCTTTTTTAACGTCGTTATTCACCGTTTACCGCTCATGATGGAGCAAACCGAAACCGTTAATCTCT
GCTTTCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGATAATATTCCCCTGCTGAGCTTTCTGTGG
CTGAAGGGGCATTCACGCTGCTGCGGGCTACCGATATCTCGTCGTTATCCGCTGGTAGAACTGGCGACCGGCGTGCTGTT
TGCGCTGGCCGGGTACCTGATGCCGCCGGGGATGCCGCTGCTGGGCGGCTTGCTTCTGCTGTCGGTTCTGCTAATCCTTG
CCGCCATCGACGCGCAAACGCTGCTGCTGCCCGATCGGCTGACCCTACCGCTGCTGTGGGGAGGGTTGTTGTTTAATCTT
AACGATACCTTCGTGCCGCTGGCGGATGCGGTCATCGGCGCGATGGCCGGGTATTTGTCGCTCTGGACGGTGTACTGGGT
ATTTCGTCTGCTGACCGGTAAGGAGGCGCTGGGCTACGGTGATTTTAAGCTACTGGCGGCGCTCGGGGCGTGGTCCGGCT
GGCAGTGGCTACCGCAGACGCTGCTACTGGCCTCCGCCAGCGGCCTGGTCTGGACGCTGTTACAGCGGCTGGTGACCCGA
CAGTCGCTGCAACAACCGCTGGCCTTCGGCCCCTGGCTGGCGTTTGCGGGGGGCGGCATCTTTTTGTGGAATCAGATATA
A

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-111)

• Type IV leader peptidase family (Peptidase_A24) (124-232)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.231	97.744	0.481
pilD	Neisseria gonorrhoeae MS11	46.718	97.368	0.455
pilD	Vibrio campbellii strain DS40M4	43.636	100	0.451
pilD	Acinetobacter nosocomialis M2	44.402	97.368	0.432
pilD	Acinetobacter baumannii D1279779	44.015	97.368	0.429