Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KAN02_RS17755 Genome accession   NZ_CP036171
Coordinates   3697433..3698854 (+) Length   473 a.a.
NCBI ID   WP_087605898.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692433..3703854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS17735 (KAN02_17735) thrC 3692688..3693827 (+) 1140 WP_002048893.1 threonine synthase -
  KAN02_RS17740 (KAN02_17740) pbpG 3693936..3694982 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  KAN02_RS17745 (KAN02_17745) - 3695194..3695829 (+) 636 WP_000633799.1 response regulator -
  KAN02_RS17750 (KAN02_17750) pilS 3695840..3697408 (+) 1569 WP_213062638.1 PAS domain-containing sensor histidine kinase Regulator
  KAN02_RS17755 (KAN02_17755) pilR 3697433..3698854 (+) 1422 WP_087605898.1 sigma-54-dependent transcriptional regulator Regulator
  KAN02_RS17760 (KAN02_17760) - 3698858..3700042 (-) 1185 WP_004883636.1 S41 family peptidase -
  KAN02_RS17765 (KAN02_17765) gpmI 3700058..3701605 (-) 1548 WP_004883637.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  KAN02_RS17770 (KAN02_17770) lptG 3701731..3702801 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53220.41 Da        Isoelectric Point: 6.7827

>NTDB_id=347311 KAN02_RS17755 WP_087605898.1 3697433..3698854(+) (pilR) [Acinetobacter nosocomialis strain KAN02]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
FQNRVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=347311 KAN02_RS17755 WP_087605898.1 3697433..3698854(+) (pilR) [Acinetobacter nosocomialis strain KAN02]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGATTAGACTTAGTCAAACATGTCTCTCAAAATTATACCAACACTCCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGCGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAAGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAGGTTAAATTGCTGCGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGTGTGATTAGTGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAACTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCACATTTGCACCCTGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTTCAGAATCGCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.926

100

0.949
  pilR Pseudomonas aeruginosa PAK

50.763

97.04

0.493

Multiple sequence alignment