Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EXW56_RS19075 Genome accession   NZ_CP036132
Coordinates   3753132..3753566 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS823     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3748132..3758566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS19060 (EXW56_19455) - 3749297..3749854 (+) 558 WP_215596854.1 PadR family transcriptional regulator -
  EXW56_RS19065 (EXW56_19460) metE 3750375..3752663 (+) 2289 WP_215596855.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EXW56_RS19070 (EXW56_19465) comJ 3752703..3753092 (-) 390 WP_002111536.1 competence protein ComJ -
  EXW56_RS19075 (EXW56_19470) nucA/comI 3753132..3753566 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  EXW56_RS19080 (EXW56_19475) - 3753803..3754546 (+) 744 WP_215596856.1 DUF3967 domain-containing protein -
  EXW56_RS19085 (EXW56_19480) - 3754606..3755880 (-) 1275 WP_002111540.1 HAMP domain-containing sensor histidine kinase -
  EXW56_RS19090 (EXW56_19485) - 3756190..3756390 (+) 201 WP_002111542.1 hypothetical protein -
  EXW56_RS19095 (EXW56_19490) - 3756610..3757773 (+) 1164 WP_215596857.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=347034 EXW56_RS19075 WP_002014817.1 3753132..3753566(-) (nucA/comI) [Bacillus mycoides strain JAS823]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=347034 EXW56_RS19075 WP_002014817.1 3753132..3753566(-) (nucA/comI) [Bacillus mycoides strain JAS823]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATACCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGGCATTCAGAAATGTGCACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCTCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAGGGTGGAAA
AGGAGCCCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542

Multiple sequence alignment