Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW56_RS19940 Genome accession   NZ_CP036132
Coordinates   3907486..3908280 (-) Length   264 a.a.
NCBI ID   WP_002111741.1    Uniprot ID   J8E5N5
Organism   Bacillus mycoides strain JAS823     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3902486..3913280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS19915 (EXW56_20325) - 3903098..3905170 (-) 2073 WP_215596883.1 sigma-54-dependent Fis family transcriptional regulator -
  EXW56_RS19920 (EXW56_20330) - 3905308..3905541 (+) 234 WP_002111735.1 DUF2627 domain-containing protein -
  EXW56_RS19925 (EXW56_20335) - 3905584..3906318 (-) 735 WP_002111737.1 glycerophosphodiester phosphodiesterase -
  EXW56_RS19930 (EXW56_20340) - 3906369..3906515 (+) 147 WP_001247671.1 YycC family protein -
  EXW56_RS19935 (EXW56_20345) - 3906664..3907236 (-) 573 WP_016106126.1 PRK06770 family protein -
  EXW56_RS19940 (EXW56_20350) spo0A 3907486..3908280 (-) 795 WP_002111741.1 sporulation transcription factor Spo0A Regulator
  EXW56_RS19945 (EXW56_20360) spoIVB 3908567..3909859 (-) 1293 WP_033716821.1 SpoIVB peptidase -
  EXW56_RS19950 (EXW56_20365) recN 3909978..3911717 (-) 1740 WP_002145805.1 DNA repair protein RecN Machinery gene
  EXW56_RS19955 (EXW56_20370) argR 3911988..3912437 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29579.37 Da        Isoelectric Point: 7.1180

>NTDB_id=347035 EXW56_RS19940 WP_002111741.1 3907486..3908280(-) (spo0A) [Bacillus mycoides strain JAS823]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKENATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=347035 EXW56_RS19940 WP_002111741.1 3907486..3908280(-) (spo0A) [Bacillus mycoides strain JAS823]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGCTATGTTGCTGCTCAGGA
TGATATGGAAGTTATTGGGATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AACGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAATGCTACCATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATTGATGGCAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCAAAGAAATATAATACAACAGCAAGTCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCGATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8E5N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment