Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW56_RS18170 Genome accession   NZ_CP036132
Coordinates   3576762..3577541 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS823     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3571762..3582541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS18145 (EXW56_18530) uppS 3572524..3573300 (-) 777 WP_002111371.1 isoprenyl transferase -
  EXW56_RS18150 (EXW56_18535) frr 3573386..3573943 (-) 558 WP_000531506.1 ribosome recycling factor -
  EXW56_RS18155 (EXW56_18540) pyrH 3573947..3574669 (-) 723 WP_002111372.1 UMP kinase -
  EXW56_RS18160 (EXW56_18545) tsf 3574736..3575623 (-) 888 WP_002088177.1 translation elongation factor Ts -
  EXW56_RS18165 (EXW56_18550) rpsB 3575706..3576407 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  EXW56_RS18170 (EXW56_18555) codY 3576762..3577541 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW56_RS18175 (EXW56_18560) hslU 3577619..3579010 (-) 1392 WP_002111373.1 ATP-dependent protease ATPase subunit HslU -
  EXW56_RS18180 (EXW56_18565) hslV 3579033..3579575 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW56_RS18185 (EXW56_18570) xerC 3579618..3580517 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  EXW56_RS18190 (EXW56_18575) trmFO 3580589..3581893 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=347032 EXW56_RS18170 WP_002014541.1 3576762..3577541(-) (codY) [Bacillus mycoides strain JAS823]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=347032 EXW56_RS18170 WP_002014541.1 3576762..3577541(-) (codY) [Bacillus mycoides strain JAS823]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCAAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAGAACGAACGTATGAAACACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGCTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment