Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW56_RS06070 Genome accession   NZ_CP036132
Coordinates   1203219..1205045 (+) Length   608 a.a.
NCBI ID   WP_002201373.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS823     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198219..1210045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW56_RS06050 (EXW56_06200) - 1198430..1199104 (-) 675 WP_002201377.1 TerC family protein -
  EXW56_RS06055 (EXW56_06205) mecA 1199542..1200225 (+) 684 WP_002201376.1 adaptor protein MecA Regulator
  EXW56_RS06060 (EXW56_06210) - 1200298..1201842 (+) 1545 WP_002201375.1 cardiolipin synthase -
  EXW56_RS06065 (EXW56_06215) - 1201933..1203168 (+) 1236 WP_215597567.1 competence protein CoiA family protein -
  EXW56_RS06070 (EXW56_06220) pepF 1203219..1205045 (+) 1827 WP_002201373.1 oligoendopeptidase F Regulator
  EXW56_RS06075 - 1205192..1205365 (-) 174 WP_000748141.1 hypothetical protein -
  EXW56_RS06080 (EXW56_06225) - 1205595..1206488 (-) 894 WP_002158882.1 ClpXP adapter SpxH family protein -
  EXW56_RS06085 (EXW56_06230) - 1206488..1206886 (-) 399 WP_000043388.1 hypothetical protein -
  EXW56_RS06090 (EXW56_06235) - 1207071..1207649 (-) 579 WP_215597306.1 CYTH domain-containing protein -
  EXW56_RS06095 (EXW56_06240) - 1207794..1208165 (+) 372 WP_002149812.1 hypothetical protein -
  EXW56_RS06100 (EXW56_06245) - 1208196..1208834 (+) 639 WP_002201371.1 GTP pyrophosphokinase family protein -
  EXW56_RS06105 (EXW56_06250) - 1208853..1209650 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70304.64 Da        Isoelectric Point: 4.6198

>NTDB_id=347022 EXW56_RS06070 WP_002201373.1 1203219..1205045(+) (pepF) [Bacillus mycoides strain JAS823]
MAEQNTVKSLPNRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGTYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=347022 EXW56_RS06070 WP_002201373.1 1203219..1205045(+) (pepF) [Bacillus mycoides strain JAS823]
ATGGCTGAACAAAATACAGTGAAATCATTGCCAAATCGTAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGAA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACATTGCAAACTTTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGTCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACATACGGAACATATAAGAACACATTTGCAAGTACG
CTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCATATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCTTCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTCGGGGACGCTTTAGT
AATTGATAAAGAAATCGGTTTAGAATGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTTTGTCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCACTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492

Multiple sequence alignment