Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SAVC_RS08075 Genome accession   NC_016912
Coordinates   1635503..1636765 (-) Length   420 a.a.
NCBI ID   WP_000472291.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630503..1641765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS08050 (SAVC_07555) - 1630701..1631369 (-) 669 WP_000805950.1 uroporphyrinogen-III synthase -
  SAVC_RS08055 (SAVC_07560) hemC 1631391..1632317 (-) 927 WP_001230228.1 hydroxymethylbilane synthase -
  SAVC_RS08060 (SAVC_07565) ccsA 1632359..1633174 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  SAVC_RS08065 (SAVC_07570) hemA 1633196..1634542 (-) 1347 WP_000545467.1 glutamyl-tRNA reductase -
  SAVC_RS08070 (SAVC_07575) yihA 1634759..1635349 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SAVC_RS08075 (SAVC_07580) clpX 1635503..1636765 (-) 1263 WP_000472291.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SAVC_RS08080 (SAVC_07585) tig 1636916..1638217 (-) 1302 WP_000127573.1 trigger factor -
  SAVC_RS08085 - 1638265..1638375 (-) 111 WP_011447025.1 hypothetical protein -
  SAVC_RS08090 (SAVC_07590) - 1638380..1639309 (-) 930 WP_001280018.1 hypothetical protein -
  SAVC_RS08095 (SAVC_07595) - 1639328..1639936 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  SAVC_RS08105 (SAVC_07600) rplT 1640078..1640434 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  SAVC_RS08110 (SAVC_07605) rpmI 1640481..1640681 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  SAVC_RS08115 (SAVC_07610) infC 1640710..1641237 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46366.59 Da        Isoelectric Point: 4.2903

>NTDB_id=34701 SAVC_RS08075 WP_000472291.1 1635503..1636765(-) (clpX) [Staphylococcus aureus subsp. aureus VC40]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGRGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=34701 SAVC_RS08075 WP_000472291.1 1635503..1636765(-) (clpX) [Staphylococcus aureus subsp. aureus VC40]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGAGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACCTTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531

Multiple sequence alignment