Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GII85_RS20135 Genome accession   NZ_CP045817
Coordinates   3941259..3941948 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain P5_B1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3936259..3946948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS20115 (GII85_20115) yxeA 3937164..3937511 (-) 348 WP_021481023.1 YxeA family protein -
  GII85_RS20120 (GII85_20120) yxdM 3937525..3939393 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  GII85_RS20125 (GII85_20125) yxdL 3939368..3940141 (-) 774 WP_041850316.1 ABC transporter ATP-binding protein YxdL -
  GII85_RS20130 (GII85_20130) yxdK 3940285..3941262 (-) 978 WP_021481026.1 two-component system sensor histidine kinase YxdK -
  GII85_RS20135 (GII85_20135) braR 3941259..3941948 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  GII85_RS20140 (GII85_20140) iolJ 3942056..3942928 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  GII85_RS20145 (GII85_20145) iolI 3942949..3943785 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  GII85_RS20150 (GII85_20150) iolH 3943871..3944740 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  GII85_RS20155 (GII85_20155) iolG 3944760..3945794 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=346872 GII85_RS20135 WP_003243527.1 3941259..3941948(-) (braR) [Bacillus subtilis strain P5_B1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=346872 GII85_RS20135 WP_003243527.1 3941259..3941948(-) (braR) [Bacillus subtilis strain P5_B1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment