Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW48_RS06325 Genome accession   NZ_CP036101
Coordinates   1279458..1281284 (+) Length   608 a.a.
NCBI ID   WP_000003403.1    Uniprot ID   A0AB73S126
Organism   Bacillus wiedmannii strain JAS28/2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274458..1286284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS06305 (EXW48_06345) - 1274765..1275439 (-) 675 WP_000362613.1 TerC family protein -
  EXW48_RS06310 (EXW48_06350) mecA 1275782..1276465 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  EXW48_RS06315 (EXW48_06355) - 1276538..1278082 (+) 1545 WP_000799209.1 cardiolipin synthase -
  EXW48_RS06320 (EXW48_06360) - 1278163..1279407 (+) 1245 WP_106074361.1 competence protein CoiA family protein -
  EXW48_RS06325 (EXW48_06365) pepF 1279458..1281284 (+) 1827 WP_000003403.1 oligoendopeptidase F Regulator
  EXW48_RS06330 - 1281414..1281587 (-) 174 WP_046957017.1 hypothetical protein -
  EXW48_RS06335 (EXW48_06370) - 1281818..1282711 (-) 894 WP_000360672.1 ClpXP adapter SpxH family protein -
  EXW48_RS06340 (EXW48_06375) - 1282711..1283109 (-) 399 WP_000043382.1 hypothetical protein -
  EXW48_RS06345 (EXW48_06380) - 1283290..1283868 (-) 579 WP_046957019.1 CYTH domain-containing protein -
  EXW48_RS06350 (EXW48_06385) - 1284015..1284386 (+) 372 WP_001179998.1 hypothetical protein -
  EXW48_RS06355 (EXW48_06390) - 1284417..1285055 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  EXW48_RS06360 (EXW48_06395) - 1285074..1285871 (+) 798 WP_000673190.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70182.43 Da        Isoelectric Point: 4.6141

>NTDB_id=346774 EXW48_RS06325 WP_000003403.1 1279458..1281284(+) (pepF) [Bacillus wiedmannii strain JAS28/2]
MSEQNTTKTLPNRSEIEESNTWRLEDIFQTDAEWEKEFQAIKGLLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSIAEDTLQTFLTENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=346774 EXW48_RS06325 WP_000003403.1 1279458..1281284(+) (pepF) [Bacillus wiedmannii strain JAS28/2]
ATGTCTGAACAAAACACAACAAAAACATTACCAAATCGCAGTGAGATTGAAGAATCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGGGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGGACAATTTGCTTGAGGCATTGCAATATGAAGACGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTGCAGAAGATACACTGCAAACATTCTTGA
CAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTGGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGGAAATATAAGAACACATTTGCAAGCACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCGCGTGTTCGTAAATACGATTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAACGTACTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTCGGTCATTCC
GTGCATAGCTACTATACAAGAAAGACGCAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCACTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTTTATCTAAACAAATTTTAGAAGAGGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492

Multiple sequence alignment