Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GII85_RS06085 Genome accession   NZ_CP045817
Coordinates   1188109..1189026 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain P5_B1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183109..1194026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII85_RS06070 (GII85_06070) trpS 1183689..1184681 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  GII85_RS06075 (GII85_06075) oppA 1185425..1187062 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GII85_RS06080 (GII85_06080) oppB 1187170..1188105 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GII85_RS06085 (GII85_06085) amiD 1188109..1189026 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GII85_RS06090 (GII85_06090) oppD 1189031..1190107 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GII85_RS06095 (GII85_06095) oppF 1190109..1191026 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GII85_RS06100 (GII85_06100) yjbB 1191132..1192349 (+) 1218 WP_080332593.1 MFS transporter -
  GII85_RS06105 (GII85_06105) yjbC 1192513..1193091 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  GII85_RS06110 (GII85_06110) spx 1193272..1193667 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=346773 GII85_RS06085 WP_003232954.1 1188109..1189026(+) (amiD) [Bacillus subtilis strain P5_B1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=346773 GII85_RS06085 WP_003232954.1 1188109..1189026(+) (amiD) [Bacillus subtilis strain P5_B1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGTGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment