Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW29_RS07765 Genome accession   NZ_CP036090
Coordinates   1497751..1498353 (-) Length   200 a.a.
NCBI ID   WP_000155587.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS13/1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492751..1503353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW29_RS07745 (EXW29_07850) dnaD 1493096..1493803 (+) 708 WP_097954493.1 DNA replication protein DnaD -
  EXW29_RS07750 (EXW29_07855) nth 1493819..1494466 (+) 648 WP_000933024.1 endonuclease III -
  EXW29_RS07755 (EXW29_07860) - 1494470..1494988 (+) 519 WP_097954494.1 YpoC family protein -
  EXW29_RS07760 (EXW29_07865) - 1495012..1497684 (-) 2673 WP_097954495.1 PBP1A family penicillin-binding protein -
  EXW29_RS07765 (EXW29_07870) recU 1497751..1498353 (-) 603 WP_000155587.1 Holliday junction resolvase RecU Machinery gene
  EXW29_RS07770 (EXW29_07875) - 1498457..1499482 (+) 1026 WP_097954502.1 DUF2515 domain-containing protein -
  EXW29_RS30870 - 1499647..1499826 (-) 180 WP_350465667.1 phage portal protein -
  EXW29_RS07775 (EXW29_07880) - 1499912..1500154 (+) 243 WP_001252045.1 hypothetical protein -
  EXW29_RS07780 (EXW29_07885) - 1500170..1500514 (+) 345 WP_000455491.1 YppE family protein -
  EXW29_RS07785 (EXW29_07890) - 1500541..1500732 (-) 192 WP_000242658.1 YppF family protein -
  EXW29_RS07790 (EXW29_07895) - 1500910..1501422 (+) 513 WP_000487698.1 YppG family protein -
  EXW29_RS07795 (EXW29_07900) - 1501580..1502011 (+) 432 WP_098210078.1 spore coat protein -
  EXW29_RS07800 (EXW29_07905) - 1502068..1502622 (+) 555 WP_000869384.1 DUF1273 domain-containing protein -
  EXW29_RS07805 (EXW29_07910) gpsB 1502720..1503055 (+) 336 WP_000622427.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23261.58 Da        Isoelectric Point: 9.6725

>NTDB_id=346629 EXW29_RS07765 WP_000155587.1 1497751..1498353(-) (recU) [Bacillus toyonensis strain JAS13/1]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEAHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346629 EXW29_RS07765 WP_000155587.1 1497751..1498353(-) (recU) [Bacillus toyonensis strain JAS13/1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTAAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACTAAAGAAGAAATAGAAGCGCATGGATCATTGTTATCATGCGGCTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment