Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EXW64_RS13615 Genome accession   NZ_CP036052
Coordinates   2684927..2685508 (-) Length   193 a.a.
NCBI ID   WP_000991620.1    Uniprot ID   A0A9W5QUF9
Organism   Bacillus toyonensis strain JAS03/3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2679927..2690508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW64_RS13585 (EXW64_13925) - 2680542..2681027 (-) 486 WP_002093704.1 HIT family protein -
  EXW64_RS13590 (EXW64_13930) - 2681144..2681320 (-) 177 WP_001213777.1 hypothetical protein -
  EXW64_RS13595 (EXW64_13935) - 2681532..2681768 (+) 237 WP_000283217.1 hypothetical protein -
  EXW64_RS13600 (EXW64_13940) - 2681819..2682655 (-) 837 WP_001084772.1 proline/glycine betaine ABC transporter permease -
  EXW64_RS13605 (EXW64_13945) - 2682648..2683853 (-) 1206 WP_000370604.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  EXW64_RS13610 (EXW64_13950) - 2684025..2684882 (+) 858 WP_001227651.1 glycine betaine ABC transporter substrate-binding protein -
  EXW64_RS13615 (EXW64_13955) clpP 2684927..2685508 (-) 582 WP_000991620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EXW64_RS13620 (EXW64_13960) - 2685530..2686216 (-) 687 WP_000337530.1 RNA polymerase subunit sigma-70 -
  EXW64_RS13625 (EXW64_13965) - 2686359..2686679 (+) 321 WP_001125384.1 2Fe-2S iron-sulfur cluster-binding protein -
  EXW64_RS13630 (EXW64_13970) rpiA 2686684..2687346 (+) 663 WP_001050005.1 ribose 5-phosphate isomerase A -
  EXW64_RS13635 (EXW64_13975) - 2687461..2687895 (+) 435 WP_001190873.1 GNAT family N-acetyltransferase -
  EXW64_RS13640 (EXW64_13980) exsF 2688548..2689051 (+) 504 WP_000953228.1 exosporium protein ExsF -
  EXW64_RS13645 (EXW64_13985) - 2689348..2689812 (+) 465 WP_000024959.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21266.48 Da        Isoelectric Point: 4.9174

>NTDB_id=346285 EXW64_RS13615 WP_000991620.1 2684927..2685508(-) (clpP) [Bacillus toyonensis strain JAS03/3]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=346285 EXW64_RS13615 WP_000991620.1 2684927..2685508(-) (clpP) [Bacillus toyonensis strain JAS03/3]
ATGAATGCAATTCCATATGTAGTAGAGCAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGAATTATTATTATCGGTTCAGAAATTAACGATCAAGTAGCGAGTAGTGTTGTAGCTCAATTATTATTTCTAGAAGCGG
AAGATGCAGAGAAAGATATATATTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCAATATTAGATACA
ATGAACTTAATTAAACCAGACGTGCAAACACTTTGTATGGGATTTGCAGCATCATTTGGTGCGTTGTTACTCTTATCAGG
TGCAAAAGGAAAACGATTTGCATTGCCTAACAGTGAAATTATGATTCATCAACCGCTTGGTGGTGCGCAAGGGCAGGCAA
CTGAAATCGAAATAACAGCAAAAAGAATTTTAAAGCTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGGGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGAATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.11

98.964

0.684
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.254

97.927

0.668
  clpP Streptococcus thermophilus LMD-9

56.25

99.482

0.56
  clpP Streptococcus pneumoniae Rx1

56.25

99.482

0.56
  clpP Streptococcus pneumoniae D39

56.25

99.482

0.56
  clpP Streptococcus pneumoniae TIGR4

56.25

99.482

0.56
  clpP Streptococcus pneumoniae R6

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMG 18311

56.25

99.482

0.56
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

97.927

0.503

Multiple sequence alignment