Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW64_RS12125 Genome accession   NZ_CP036052
Coordinates   2376030..2376308 (+) Length   92 a.a.
NCBI ID   WP_000842219.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS03/3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371030..2381308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW64_RS12105 (EXW64_12385) - 2371803..2372405 (+) 603 WP_000517300.1 hypothetical protein -
  EXW64_RS12110 (EXW64_12390) - 2372905..2374086 (+) 1182 WP_001169635.1 agmatine deiminase family protein -
  EXW64_RS12115 (EXW64_12395) - 2374512..2374763 (-) 252 WP_000827556.1 helix-turn-helix transcriptional regulator -
  EXW64_RS12120 (EXW64_12400) - 2375011..2375889 (+) 879 WP_000397971.1 helix-turn-helix domain-containing protein -
  EXW64_RS12125 (EXW64_12405) abrB 2376030..2376308 (+) 279 WP_000842219.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW64_RS12130 (EXW64_12410) - 2376787..2378037 (+) 1251 WP_001032371.1 hypothetical protein -
  EXW64_RS12135 (EXW64_12415) - 2378105..2378863 (+) 759 WP_000347979.1 TSUP family transporter -
  EXW64_RS12140 (EXW64_12420) - 2379116..2379775 (+) 660 WP_098706032.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10296.07 Da        Isoelectric Point: 9.6266

>NTDB_id=346284 EXW64_RS12125 WP_000842219.1 2376030..2376308(+) (abrB) [Bacillus toyonensis strain JAS03/3]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEDDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=346284 EXW64_RS12125 WP_000842219.1 2376030..2376308(+) (abrB) [Bacillus toyonensis strain JAS03/3]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGATGATCAGATTATTTTGCGGAAATATCAATCTTCGCAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

97.826

0.522

Multiple sequence alignment