Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW51_RS20860 Genome accession   NZ_CP036043
Coordinates   4016153..4017892 (-) Length   579 a.a.
NCBI ID   WP_215573850.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4011153..4022892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS20825 (EXW51_21250) - 4011280..4011843 (-) 564 WP_002167694.1 PRK06770 family protein -
  EXW51_RS30230 - 4012141..4012239 (-) 99 Protein_4018 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  EXW51_RS20835 (EXW51_21260) - 4012478..4012753 (-) 276 WP_002067062.1 hypothetical protein -
  EXW51_RS20840 (EXW51_21265) - 4012794..4013264 (-) 471 WP_215575181.1 hypothetical protein -
  EXW51_RS20845 (EXW51_21270) - 4013287..4013493 (-) 207 WP_215573849.1 site-specific integrase -
  EXW51_RS20850 (EXW51_21275) spo0A 4013660..4014454 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW51_RS20855 (EXW51_21285) spoIVB 4014741..4016033 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  EXW51_RS20860 (EXW51_21290) recN 4016153..4017892 (-) 1740 WP_215573850.1 DNA repair protein RecN Machinery gene
  EXW51_RS20865 (EXW51_21295) argR 4018163..4018612 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW51_RS20870 (EXW51_21300) - 4018755..4019594 (-) 840 WP_002067084.1 TlyA family RNA methyltransferase -
  EXW51_RS20875 (EXW51_21305) dxs 4019598..4021490 (-) 1893 WP_002067083.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW51_RS20880 (EXW51_21310) ispA 4021799..4022692 (-) 894 WP_002015072.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65666.94 Da        Isoelectric Point: 5.2162

>NTDB_id=346191 EXW51_RS20860 WP_215573850.1 4016153..4017892(-) (recN) [Bacillus mycoides strain BPN58/4]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
GIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTNEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=346191 EXW51_RS20860 WP_215573850.1 4016153..4017892(-) (recN) [Bacillus mycoides strain BPN58/4]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGATTATTCTATGTAGAAGATGACAAGCATCCATGTATCGCAAAA
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GGCATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GATGGACAGGGATTGGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCGAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAATTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGTACGATTACATCGGTTACTG
TGTTAAGTACGAATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment